Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0972 ATGTCTCCACCGCTGCTGGTTGCTGAGGAGGAAGGGCAGAGTAACATTTCAACAGTAGCATCTTCACCGTCCTTAGACTGTATCTCCCATAATGGAACTGCATTAAAAGAGCGCAATTACCTTGGATTATCAGATTGTTCATCATCAGTTGACAGTTCTACTGTCCCGAGCAAGTCAGATGAGAAAAAGGACAACATTAATTTGAAGGCTACAGAGTTGAGTTTGGGCCTTCCCGGATCCCAGTCTCCTGAAAGGGATTCAGATCTTTATGCATCAAACTCAACAAAGCTTGATGAGAAACAGCTATTTCCTTTGCTTCCTACAAGAGATGGAATCTGTTCATCATCCCAGAAAACTGTGGTTTCAAGAAACAAGAGAGGTTTCTCTGACACCTTGAAGGGTTTCCCAGAGGGGAATTTTACTGGCAATTCAGGGATAAATTTAATGTTACCTAGATCTTCTGGAGCTCAGCCAACCTTTATGAAAGAAATACCTGCTAAAGTTTCACAGGAACGGCCTCCTGCAACCAATGGACTTAGTCATAATCAGACGGGTACTCCTGCTAATGGCAGTGCGCCAGCTGCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAATTCATTGGCTAATACTTCAAAGAACAATGATGAAGTTGATGGAAAACCTGGTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGTGCTCCTTATCTAAGGAAGGTAGATCTAAGGAATTATACAACATATCAAGAACTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCTCCTGGTGCTCCAGGCAGAGAAATGTTAAGTGAGAGCAAGTTGAGGGATCTTTTACATGGTTCTGAGAACGTTCTCACCTATGAGGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATTGACACATGCAAGAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTGGCTCCCAGAGCTATGGAAAAATCCAGGAGCAGGAGCAGGAGCTAG 1062 0.4397 MSPPLLVAEEEGQSNISTVASSPSLDCISHNGTALKERNYLGLSDCSSSVDSSTVPSKSDEKKDNINLKATELSLGLPGSQSPERDSDLYASNSTKLDEKQLFPLLPTRDGICSSSQKTVVSRNKRGFSDTLKGFPEGNFTGNSGINLMLPRSSGAQPTFMKEIPAKVSQERPPATNGLSHNQTGTPANGSAPAAKAQVVGWPPIRSYRKNSLANTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSPGAPGREMLSESKLRDLLHGSENVLTYEDKDGDWMLVGDVPWGMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRSRS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0972 353 Pfam AUX/IAA family 71 342 IPR033389 -
Lele52g0972 353 MobiDBLite consensus disorder prediction 46 67 - -
Lele52g0972 353 MobiDBLite consensus disorder prediction 167 197 - -
Lele52g0972 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 338 IPR003311 GO:0005634|GO:0006355
Lele52g0972 353 SUPERFAMILY CAD & PB1 domains 229 332 - -
Lele52g0972 353 MobiDBLite consensus disorder prediction 1 23 - -
Lele52g0972 353 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Lele52g0972 353 FunFam Auxin-responsive protein 226 343 - -
Lele52g0972 353 Gene3D - 228 344 - -
Lele52g0972 353 MobiDBLite consensus disorder prediction 173 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0972 Lele-ChrLele52 6375321 6378536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0972 233 345 B3 DNA Binding Superfamily AT1G30330 27.434 5.19e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele52g0972 AUX_IAA 1.4e-87 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0972 52 6375321 6378536 Lele52g0972 52 6375321 6378536 ECH
Lele49g0935 49 5883310 5886380 Lele52g0972 52 6375321 6378536 hybridization
Lele50g0994 50 6328817 6331724 Lele52g0972 52 6375321 6378536 hybridization