Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0964 ATGGATGTAGCCAAGGACCTTACTGCTGGCACAGTTGGAGGTGTAGCACAATTAGTATGTGGACACCCTTTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTACACCGCTTCCTGGTCAGCCTTCCAAGTATTCTGGCCCTATCGATGCTGTCAAGAAGACATTGGCTGCTGAAGGTCCTAGAGGGTTATACAAAGGTATGGGTGCACCACTTGCCACTGTGGCAGCATTTAACGCTGTCCTGTTCTCGGCCAGGGGACAAATGGAGGCCTTATTGAGGTCTAATCCTGGCGCCCCCCTTACCGTCAAACAGCAGGTGGTTTGTGGTGCTGGTGCTGGAGTTGTAGTTTCCATTCTAGCTTGCCCCACTGAACTCATCAAATGCAGGTTGCAAGCACAAAGTGTTCTTGCAGGTTCTGGAACAGCTGCTGTGGCTATCAAGTATGGAGGACCCATGGATGTGGCAAGGCAAGTTTTAAGATCAGAAGGGGGAGTGAGAGGTCTATTCAAGGGCATGGTTCCGACGTTGGCGCGCGAAGTACCGGGAAACGCGGTCATGTTTGGCGTATATGAAGCAACGAAGCAGTTGCTAGCAGGAGGTTCTGATACATCAGGGCTAAGTAGAGGCTCATTGATTGTTTCAGGAGGCTTGGCTGGAGCTTCAGTGTGGTTGGTAGTTTACCCAACTGATGTGGTGAAGAGTGTGATTCAAGTGGATGATTACAGAAATCCGAAGTTTTGTGGTTCCATTGACGCTTTCAGGAAGATTTTAGCTGCAGAAGGGTTAAAAGGTCTTTACAAGGGCTTTGGTCCTGCCATAGCTCGAAGTGTTCCAGCAAATGCAGCTTGCTTCTTGGCCTATGAAATGACGAGATCGGCCCTGGGTTGA 891 0.4994 MDVAKDLTAGTVGGVAQLVCGHPFDTIKVKLQSQPTPLPGQPSKYSGPIDAVKKTLAAEGPRGLYKGMGAPLATVAAFNAVLFSARGQMEALLRSNPGAPLTVKQQVVCGAGAGVVVSILACPTELIKCRLQAQSVLAGSGTAAVAIKYGGPMDVARQVLRSEGGVRGLFKGMVPTLAREVPGNAVMFGVYEATKQLLAGGSDTSGLSRGSLIVSGGLAGASVWLVVYPTDVVKSVIQVDDYRNPKFCGSIDAFRKILAAEGLKGLYKGFGPAIARSVPANAACFLAYEMTRSALG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0964 296 Pfam Mitochondrial carrier protein 3 95 IPR018108 -
Lele52g0964 296 Pfam Mitochondrial carrier protein 213 295 IPR018108 -
Lele52g0964 296 Pfam Mitochondrial carrier protein 102 199 IPR018108 -
Lele52g0964 296 PRINTS Mitochondrial carrier protein signature 222 240 IPR002067 GO:0055085
Lele52g0964 296 PRINTS Mitochondrial carrier protein signature 119 133 IPR002067 GO:0055085
Lele52g0964 296 PRINTS Mitochondrial carrier protein signature 267 285 IPR002067 GO:0055085
Lele52g0964 296 PRINTS Mitochondrial carrier protein signature 172 192 IPR002067 GO:0055085
Lele52g0964 296 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 3 295 - -
Lele52g0964 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 101 197 IPR018108 -
Lele52g0964 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 294 IPR018108 -
Lele52g0964 296 SUPERFAMILY Mitochondrial carrier 2 289 IPR023395 -
Lele52g0964 296 Gene3D Mitochondrial carrier domain 1 295 IPR023395 -
Lele52g0964 296 FunFam mitochondrial carnitine/acylcarnitine carrier-like protein 1 295 - -
Lele52g0964 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 92 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0964 Lele-ChrLele52 6295248 6296791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0964 21 290 Antiporters AT1G79900 34.657 7.35e-43 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0964 52 6295248 6296791 Lele52g0964 52 6295248 6296791 ECH
Lele50g0985 50 6248796 6250855 Lele52g0964 52 6295248 6296791 hybridization