Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0959 ATGACAGACTATAGGTCGCCGCCGCCGATGAATCTTTGGACCGATGACAACTCCTCCGTTATGGACGCTTTCATGAGCTCCGATCTATCCGTACTCTGGCCTCCTCCGCCTCAGCCACAATCCTCTGCTTCCACTAGTACTCTGGGACCCGACCCCACCAAGCCTCTCTCTCAGTCTCAGCCTTCCGCTGCTCTCTTCAATCAAGAAACCCTTCAGCAGCGCCTTCAGGCCTTGATTGAAGGTGCCAGAGAGAGCTGGACTTACGCTATCTTTTGGCAATCGTCGTACGACTACTCCGGCGCGTCCTTGCTCGGCTGGGGCGATGGGTACTACAAAGGTGAGGAAGATAAAGGAAAAGGGAAGGCCAAAGCGCTGTCGTCCGCGGCGGAGCAGGAGCACCGGAAGAAGGTTCTCCGCGAGCTTAATTCCCTCATTTCTGGATCCTCTTCCCCTAACGACGACGCCGTGGACGAAGAAGTCACCGATACAGAGTGGTTCTTCCTCGTTTCCATGACTCAATCGTTTGTCAACGGCGACGGGTTACCGGGCCAGGCCTTCTATAATTCCACCCCTGTCTGGATCACCGGTGGGGAGAGGTTGGTGGCTTCGACTTGTGAAAGAGCGCGACAGGGTCAGGTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAATGGGGTGGTGGAGCTGGGATCCACTGAATTGATTTTCCAAAACTCGGATCTGATGAACAAGGTGAGAGTATGGTTCAATTTCAACAATCCAGAAATTGGTTCGTGGCCTCTCATGGCTCCTAATGCCGATCAAGGTGAGAACGATCCTTCCTCGCTTTGGCTTAACGATCCGTCTTCTGGAATTGAAATCAGAGATTCGACCAACACCACTGTTCCGGCTTCGGTTCCGAGCTCGAATAACAGTCACAACATCCAGACAGTTGCTAAGCCAATGCAGTTTGAAACCCCAGTTTCGAGTACTTTAACTGAATCACCAAGTGTTGTTCATGTCCCGAATACTCAATACGGTAACCAGCAACGGCAACCGTCACAGCAGTCGCAGAACCAGGGGTTCTTCTCGAAGGAGTTGAACTTTTCAGAATATGGGTTCGACGGGAACGGCCTAAAGAACGGGAATATGCATTCCTTGAAGCCGGAATCAGGTGAAATTTTAAACTTCGGGGAGAGCAAGAGGAACTCTTATGGTGGAAATGGGAATTTCTTTACAGGACAGAGTCCATTCGTCGGAGAAGACAACAAAAAGAGGAGGTCACCTACTTCCAAGGGTAGTAACGACGAAGGGATGCTCTCGTTCACTTCCGGTGTGATTTTGCCGCCTTCTAATATGAAGTCTAGCGGCGGCGATTCCGATCACTCGGATCTTGAAGCGTCGGTGGTGAAGGAAGCGGATAGCAGCAAAGTGGTAGAACTAGAAAAGCGACCTCGAAAAAGAGGGCGAAAGCCGGCGAATGGGCGGGTGGAGCCTCTGAATCACGTGGAAGCAGAGAGACAGAGGAGAGAGAAGCTGAATCAGAGGTTCTACGCACTTCGTGCTGTGGTCCCAAACGTGTCAAAAATGGACAAAGCATCTCTCCTAGGCGACGCCATATCTTACATCAACGAGCTCAAGTCGAAGCTCCAGAATCAAGAATCAAACAACAAGGATTTACAGAAGCAACTGGATTCAGTCAAGAAGGAACTCGAACTTGCCACTAGTAAAGATTCTCGCGCGCCCCCACCAGATAAAGAACAAAAAACCTCCAACAACCAAGCAAACGGCAAGCTAATAGATTTGGACATCGATGTGAAGATCATAGGCTGGGATGCAATGATCCGAATCCAATGTAGCAAGAGGAACCATCCAGCAGCAAGGTTGATGGCGGCTTTACAGGAACTAGACCTGGAAGTAAATCATGCGAGTGTGTCGGTAGTTAATGATCTGATGATCCAACAAGCGACAGTGAAAATGGGAAGTCGATTTTACACGCAGGAGCAGCTCCGGCTAGCACTTGTATCCAAGGTCGGAGATGTCCGATGA 2034 0.5049 MTDYRSPPPMNLWTDDNSSVMDAFMSSDLSVLWPPPPQPQSSASTSTLGPDPTKPLSQSQPSAALFNQETLQQRLQALIEGARESWTYAIFWQSSYDYSGASLLGWGDGYYKGEEDKGKGKAKALSSAAEQEHRKKVLRELNSLISGSSSPNDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYNSTPVWITGGERLVASTCERARQGQVFGLQTLVCIPSANGVVELGSTELIFQNSDLMNKVRVWFNFNNPEIGSWPLMAPNADQGENDPSSLWLNDPSSGIEIRDSTNTTVPASVPSSNNSHNIQTVAKPMQFETPVSSTLTESPSVVHVPNTQYGNQQRQPSQQSQNQGFFSKELNFSEYGFDGNGLKNGNMHSLKPESGEILNFGESKRNSYGGNGNFFTGQSPFVGEDNKKRRSPTSKGSNDEGMLSFTSGVILPPSNMKSSGGDSDHSDLEASVVKEADSSKVVELEKRPRKRGRKPANGRVEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQNQESNNKDLQKQLDSVKKELELATSKDSRAPPPDKEQKTSNNQANGKLIDLDIDVKIIGWDAMIRIQCSKRNHPAARLMAALQELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALVSKVGDVR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0959 677 MobiDBLite consensus disorder prediction 569 589 - -
Lele52g0959 677 PANTHER MYC 48 672 IPR045084 GO:0003700|GO:0006355
Lele52g0959 677 MobiDBLite consensus disorder prediction 428 453 - -
Lele52g0959 677 MobiDBLite consensus disorder prediction 401 503 - -
Lele52g0959 677 MobiDBLite consensus disorder prediction 29 60 - -
Lele52g0959 677 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Lele52g0959 677 FunFam Transcription factor bHLH13 485 559 - -
Lele52g0959 677 Gene3D - 494 570 IPR036638 GO:0046983
Lele52g0959 677 Pfam Helix-loop-helix DNA-binding domain 496 541 IPR011598 GO:0046983
Lele52g0959 677 SMART finulus 498 547 IPR011598 GO:0046983
Lele52g0959 677 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 492 541 IPR011598 GO:0046983
Lele52g0959 677 CDD bHLH_AtAIB_like 489 565 - -
Lele52g0959 677 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 495 561 IPR036638 GO:0046983
Lele52g0959 677 Coils Coil 538 572 - -
Lele52g0959 677 MobiDBLite consensus disorder prediction 42 60 - -
Lele52g0959 677 MobiDBLite consensus disorder prediction 454 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0959 Lele-ChrLele52 6265690 6267723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0959 1 674 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.196 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g0959 bHLH-MYC_N 5.3e-55 CL0161