Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0958 ATGGCCTCCGACACCTTCCCCGACAAGAATGCTGTCTTCAGAAAACTCAAGACAAAGTCCGATAACAAGATGTGTTTTGATTGCAATGCAAGGAATCCAACTTGGGCGTCAGTTACATATGGGATCTTCCTCTGCATCGATTGCTCGGCTGTTCATCGCAGCCTTGGTGTGCACGTCAGCTTTGTGAGATCTACGAATTTAGACTCATGGACACCTGAGCAGCTGAGAACAATGAGCTTTGGAGGAAACAATCGTGCACATGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGAAAAATTGAGGCCAAGTATACATCTAGAGCTGCAGAGTTGTATAGACAACTTCTCTCCAAGGAAGGAGCTAAAAGTATGGCAGAGGAGGCAGGTTTACCATCCTCACCTGTTGCTTCCCAGTCTGCACAAGTGGCTAATGGACTTCCTGAAGTCAGGACCAATGAACCACCAAAAGAAAACATTTCGGAAAAGCCAGAAATGCCTGAGGGCACTGCTTCCCCTAAAGCTTCTCATATAACACTTTCCAGTACTTTCAAGAAACCTATTGGTGCCAAAAAAGGTGGCAAGACTGGGGGCCTTGGTGCCCGGAAGCTTACTAAAAAGCCGAGTGGATCTCTATATGAGCAAAAGCCAGAAGAAGCACCTGCTCCCGTTTCTTCCTCATCAAGCAATGCTTTGGCAGCTCGGCCACCCTTGACATCTCGGTTTGAGTATGTTGAAAATGTCCAGTCATCTGAGTTAAATTCAGTAGGAGGTTCACACGTACATGGTCATGTGGCTCCACCAAAGTCATCGAGTTTTTTTGCTGATTTTGGGATGGATAGTGGCTTACCAAAACGGTCTGGGTCAAATTCCTCAAAAGTGGAAGGTCAGGAATCTGATGAAGCAAGGAAGAAGTTCTCAAATGCTAAATCTATATCCTCAGCCCAATTTTTTGGAGATCAAAACAAAGCTGCCGATATGGAGAGTCAAGCTACTTTGGCAAAGTTCTCGGGTTCAAGTGCCATCTCTAGTGCAGATCTTTTTGGTCACTCAGCGGATCCCTCCATTGATGTCACTGCAAGTGACCTCATTAATCGACTCTCTTTCCAGGCACAGCAGGATATCTCTTCTATCAAAAACATGGCCGGAGAGACTGGGAAGAAGCTGAGTTCTTTGGCATCCACATTGATGACAGATCTTCAGGACAGAATCCTCTAA 1218 0.4565 MASDTFPDKNAVFRKLKTKSDNKMCFDCNARNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLRTMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAAELYRQLLSKEGAKSMAEEAGLPSSPVASQSAQVANGLPEVRTNEPPKENISEKPEMPEGTASPKASHITLSSTFKKPIGAKKGGKTGGLGARKLTKKPSGSLYEQKPEEAPAPVSSSSSNALAARPPLTSRFEYVENVQSSELNSVGGSHVHGHVAPPKSSSFFADFGMDSGLPKRSGSNSSKVEGQESDEARKKFSNAKSISSAQFFGDQNKAADMESQATLAKFSGSSAISSADLFGHSADPSIDVTASDLINRLSFQAQQDISSIKNMAGETGKKLSSLASTLMTDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0958 405 Pfam Putative GTPase activating protein for Arf 12 109 IPR001164 GO:0005096
Lele52g0958 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 119 IPR037278 -
Lele52g0958 405 MobiDBLite consensus disorder prediction 133 147 - -
Lele52g0958 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Lele52g0958 405 MobiDBLite consensus disorder prediction 276 307 - -
Lele52g0958 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lele52g0958 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lele52g0958 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lele52g0958 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 405 - -
Lele52g0958 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 115 IPR001164 GO:0005096
Lele52g0958 405 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Lele52g0958 405 MobiDBLite consensus disorder prediction 124 234 - -
Lele52g0958 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lele52g0958 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0958 Lele-ChrLele52 6247248 6251961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0958 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 3.17e-20 89.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0958 52 6247248 6251961 Lele52g0958 52 6247248 6251961 ECH
Lele49g0923 49 5773368 5778044 Lele52g0958 52 6247248 6251961 hybridization
Lele50g0980 50 6202925 6207649 Lele52g0958 52 6247248 6251961 hybridization