Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0949 ATGGCCATCGAGACCCGCGACACCCCTGTCATGGAAATCAAGCCGAAGAACAGGAGAATCATGGGTGCTGGAGGTCCTGATGACGAGGACAACAGGTGGCCGCCATGGTTGAAGCCTCTGCTGAAAGAAAGCTTCTTTGTTCATTGCCAGGTGCACGGTGATTCTCCCAAGAGCGAATGCAATATGTATTGCTTGGATTGTATGAACGGCGCTCTCTGTTCCCTCTGCCTCGCCTACCACAGAGACCATCGTGTTATACAGATAAGGAGGTCATCTTACCACGATGTGATTAGGGTCAATGAGATTCAGAAAGTTCTCGACATATCCGGCGTTCAGACCTACATTATCAACAGCGCAAGGGTAGTGTTCTTGAACGAGAGGCCTCAGCCTAGGCCCGGCAAGGGCGTCACCAACACTTGCGAAGTCTGTGATCGTAGCCTCCTCGATTCCTATCGATTCTGTTCTCTCGGTTGCAAGACTGTGGGGACATCGAGGGATTTCCAGAAGAAGAAAAGGTCGGCGGCGGCATTCGCATCGGAGTCAGAGGATTCATACAGCAGCAGCAGCAGCCACAGCCGGCACAAGAACAGTAAAGCTCAGAGCTTTACGCCGTCGACACCACCGCCGACTTCGGTGAATTACAGAACGGCCAAGAGAAGAAAGGGAATACCTCACAGAGCCCCAATGGGAGGACTAATCATAGAATACTAG 711 0.519 MAIETRDTPVMEIKPKNRRIMGAGGPDDEDNRWPPWLKPLLKESFFVHCQVHGDSPKSECNMYCLDCMNGALCSLCLAYHRDHRVIQIRRSSYHDVIRVNEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSYRFCSLGCKTVGTSRDFQKKKRSAAAFASESEDSYSSSSSHSRHKNSKAQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLIIEY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0949 236 Pfam PLATZ transcription factor 89 159 IPR006734 -
Lele52g0949 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 27 229 - -
Lele52g0949 236 SMART bboxneu5 44 88 IPR000315 GO:0008270
Lele52g0949 236 MobiDBLite consensus disorder prediction 178 236 - -
Lele52g0949 236 MobiDBLite consensus disorder prediction 179 213 - -
Lele52g0949 236 CDD Bbox2 48 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0949 Lele-ChrLele52 6181924 6183396 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lele52g0949 PLATZ 9.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0949 52 6181924 6183396 Lele52g0949 52 6181924 6183396 ECH
Lele49g0917 49 5728841 5730292 Lele52g0949 52 6181924 6183396 hybridization
Lele50g0973 50 6156621 6158549 Lele52g0949 52 6181924 6183396 hybridization