Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0947 ATGGCCACTTTAGAATCTGCACTCACAGTCTTGGGATCTTTCCGTTGTTATAATAATAAGCACTCTTCATCTGCAAAACCATTCGATTGGATAAAACTCAACGTCTCCACTTCTCTTTTTCCCATTTCCCACAGTTGCGTCGTCCCTTCAATTTTCTCCTCCATCGACTCCAGCTCAAGGCTCTGCTTCGAATTATGCTCTGCGCTGCAAGAGGCGGCAACAGAACAAAAACCGGAGCAAACCCAGGGAACCAACATAAAAAAGAAGCTCTACGTGTTCAATCTACCATGGTCGCTATCGGTGGCGGACATCAAGAACCTCTTTGGTCAATGCGGAACTGTAGCCGATGTCGAGATAATAAAAAACCAAGATGGGAAGAGCAGAGGATTTGCCTTCGTCACTATGGCTTCCGGGGAAGAGGCTCAGATTGCTATTGATAAGTTTGACTCTCATGAATTATCTGGCCGGATAATAAGAGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGCCCTCCTAAAACTCCCCCTGCTGGTGAAGCAAGCCATAAAATTTATGCCTCCAATCTAGCCTGGAAAGCAAGATCTAGCCATCTCAGAGAATTCTTCGCAGAGAATTTCAAGTCACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCTAATGGAAGATCTGCTGGGTATGGATTTGTTTCTTTTGCTACGAGGGATGAAGCAGAGGCCGCCATTTCTACTCTGGATGGGAAGGAATTAATGGGGCGACCACTTCGCCTAAAATTCAGTGAAAGGACTGTCAAAGAATCTGGGGATGAGAAAGGAGAAGAGCAAAGTTCTGATGATGAACCGGCAGAATCATAG 861 0.4588 MATLESALTVLGSFRCYNNKHSSSAKPFDWIKLNVSTSLFPISHSCVVPSIFSSIDSSSRLCFELCSALQEAATEQKPEQTQGTNIKKKLYVFNLPWSLSVADIKNLFGQCGTVADVEIIKNQDGKSRGFAFVTMASGEEAQIAIDKFDSHELSGRIIRVELAKRFKKPPPPRPPKTPPAGEASHKIYASNLAWKARSSHLREFFAENFKSPVSARVVFDSPNGRSAGYGFVSFATRDEAEAAISTLDGKELMGRPLRLKFSERTVKESGDEKGEEQSSDDEPAES 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0947 286 SMART rrm1_1 89 161 IPR000504 GO:0003723
Lele52g0947 286 SMART rrm1_1 186 260 IPR000504 GO:0003723
Lele52g0947 286 MobiDBLite consensus disorder prediction 261 286 - -
Lele52g0947 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Lele52g0947 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Lele52g0947 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 258 IPR000504 GO:0003723
Lele52g0947 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Lele52g0947 286 Gene3D - 177 285 IPR012677 -
Lele52g0947 286 Gene3D - 66 176 IPR012677 -
Lele52g0947 286 SUPERFAMILY RNA-binding domain, RBD 168 265 IPR035979 GO:0003676
Lele52g0947 286 SUPERFAMILY RNA-binding domain, RBD 78 173 IPR035979 GO:0003676
Lele52g0947 286 PANTHER OS02G0815200 PROTEIN 69 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0947 Lele-ChrLele52 6168977 6171660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0947 90 272 Eukaryotic Initiation Factors Gene Family AT4G34110 26.131 1.33e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0947 52 6168977 6171660 Lele52g0947 52 6168977 6171660 ECH
Lele49g0915 49 5715514 5717926 Lele52g0947 52 6168977 6171660 hybridization
Lele50g0970 50 6138787 6141524 Lele52g0947 52 6168977 6171660 hybridization