Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0946 ATGGCGGCGCTTGGAAACCCAAAAACTTGGATTCCTTACGTGAACATCAGAGATTGTTCTCAAGGTTTTTGCAGTGCTTACTGTCCACAGTGGTGTTATATAGTTCTTCCTCCTCCTCCTCCTCCTCCTGCTCTCGATTTCACTCAAAATGAAGATTCTTCCCCAAATTTCTCTCCTCTTGTTGTAGCCATAATTGGCATCTTGGCCGGTGCTTTCCTTCTGGTAAGTTATTACACTTTCATATCCAAGTACTGTGGAAACAGAGCAGGATCTTCCAACAGAGAGAATCTTCACCATAATGATGAGATTATTGAAGATAATGACAACCCTCCTCTGCACGAGCCATGGCATGTTCAAACCAATGGATTAGATGAAGCTCTGATAAAGTCGATCACAGTGTGCAAGTACAAAAGAGGAGATGGGTTGGTTGGTGTCACAGATTGCTCTGTTTGTCTCAGTGAGTTTCGAGAAGATGAACATGTCAGGTTATTGCCCAAATGCAGTCACGCTTTTCACCTTCCTTGTATCGATCAATGGCTGAAATCTCACTCTAATTGCCCTCTCTGTCGTGCTCTTATCTTCACCTTCAATGCTTCTTCCACCCCTCAAGTGGTTCCATTTCCACCTGTAATACAAGAAGAAGAATCTTCCTCTGGAAATGAATCTTCTTCTTCAAGGGAAATTCAGAATGCGAATGAAGAAAACAGAGCAGTTGGGGATGTGGAAGAAGAAGGTCGGAAGCATGCGTTGCGTGCTTTTAGCGATCTGGGTTTTCGTCCAGGGAGGCATAGAATGATGATAGAGATGATCAGAGATGAAGGGGATGTTGAAGAAGACGATGAAGCCATAAGAAGGTCAGTGTCGATGGATCATCATTCGCTGCAAATTGGTGGAGTAGTATCAAACGAAGCAGGTACTTCAAAGAGATCTTCACAAGGAGAAAGTAGCAAGTCTAGTAGTAGCAGAAGAATGGTGCTTCTGCATTGTGTGTTTAGTCCAATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGCAGAGCAAGGCAGGGGACTATCCCTGTCTGA 1083 0.4377 MAALGNPKTWIPYVNIRDCSQGFCSAYCPQWCYIVLPPPPPPPALDFTQNEDSSPNFSPLVVAIIGILAGAFLLVSYYTFISKYCGNRAGSSNRENLHHNDEIIEDNDNPPLHEPWHVQTNGLDEALIKSITVCKYKRGDGLVGVTDCSVCLSEFREDEHVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRALIFTFNASSTPQVVPFPPVIQEEESSSGNESSSSREIQNANEENRAVGDVEEEGRKHALRAFSDLGFRPGRHRMMIEMIRDEGDVEEDDEAIRRSVSMDHHSLQIGGVVSNEAGTSKRSSQGESSKSSSSRRMVLLHCVFSPITMKRSFSSGRFSFRRNGRARQGTIPV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0946 360 MobiDBLite consensus disorder prediction 298 322 - -
Lele52g0946 360 CDD RING-H2_PA-TM-RING 147 190 - -
Lele52g0946 360 MobiDBLite consensus disorder prediction 213 232 - -
Lele52g0946 360 MobiDBLite consensus disorder prediction 299 322 - -
Lele52g0946 360 PANTHER RING-H2 FINGER PROTEIN ATL16 43 324 IPR044600 GO:0016567|GO:0016740
Lele52g0946 360 SUPERFAMILY RING/U-box 147 196 - -
Lele52g0946 360 Pfam Ring finger domain 147 190 IPR001841 -
Lele52g0946 360 MobiDBLite consensus disorder prediction 212 243 - -
Lele52g0946 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 196 IPR013083 -
Lele52g0946 360 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lele52g0946 360 FunFam RING-H2 finger protein ATL54 123 196 - -
Lele52g0946 360 SMART ring_2 148 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0946 Lele-ChrLele52 6165124 6166206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0946 6 360 C3H Transcription Factor Family AT5G17600 41.161 5.88e-69 219