Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0945 ATGATGACTCTGCTTGAGACTCTTTCTTCTAATGAGCTTTACAACTTCATTATCCATGACACTATCTCTGCAACCCCATTTGATTCCTCCTCAGAAAACAGAGTAGTGAACCATCATCCATTACTGGAACATGACCCTGCTCCTTCTTCTTCTTCAAGGAAACGCCATTCCGATGAGCTTGAGCTTCATCAGGTGCCTGTTCTTGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCAAGAGTTTGTAAGAACAAAGAAGAAGCAGAGACTCAGAGAATGACACACATTGCAGTTGAAAGAAACCGCCGCAAGCAGATGAATGAGCATCTCGCCGTCCTCCGTTCACTCATGCCTGAATCCTACGTCCAAAGGGGTGACCATGCCTCTATAGTGGGTGGTGCTATAGAATTTGTGAAGGAGCTTGAGCATCTTTTGCAATCACTGGAAGCTAAGAAGTTGCAGATTCTGCAACAAGAAGTAGCACAAACTAATAATGAAGAATCTTCTTCTTCTTCTTCTCCATCTTCCATTTTCAAACTCACGAGTCCCCCTTTTGCACAATTCTTTGCATATCCTCAGTACAAATGGTCTCAGACTCCAACCAAATATCCTTCAAAAACTAAGGCAGCCATAGCAGATATTGAGGTTACTTTGATAGAAACACATGCAAACCTCAGAATTCTGTCAAGGAGAAGCCCCAAGCAATTGTCAAAGCTGGTCTCTGGTTTTCAAACTCTCTTCCTCACCATCCTTCATCTTAATGTCACCACCATCGACCCTTTGGTTCTTTATTCTATGAGCGCCAAGGTTGAAGAAGGATGCCACCTTGGTTCAGCGGAGGATATAGCGACAGCAGTTCATTACTTGCTGAGAAGAATTGAGGAAGAAGCTGCTTCACTTTGCTGTTGA 909 0.4378 MMTLLETLSSNELYNFIIHDTISATPFDSSSENRVVNHHPLLEHDPAPSSSSRKRHSDELELHQVPVLVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVQRGDHASIVGGAIEFVKELEHLLQSLEAKKLQILQQEVAQTNNEESSSSSSPSSIFKLTSPPFAQFFAYPQYKWSQTPTKYPSKTKAAIADIEVTLIETHANLRILSRRSPKQLSKLVSGFQTLFLTILHLNVTTIDPLVLYSMSAKVEEGCHLGSAEDIATAVHYLLRRIEEEAASLCC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0945 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 141 IPR011598 GO:0046983
Lele52g0945 302 SMART finulus 96 147 IPR011598 GO:0046983
Lele52g0945 302 Pfam Helix-loop-helix DNA-binding domain 91 142 IPR011598 GO:0046983
Lele52g0945 302 MobiDBLite consensus disorder prediction 48 62 - -
Lele52g0945 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 158 IPR036638 GO:0046983
Lele52g0945 302 Gene3D - 82 164 IPR036638 GO:0046983
Lele52g0945 302 Coils Coil 138 158 - -
Lele52g0945 302 CDD bHLH_AtFAMA_like 93 152 - -
Lele52g0945 302 PANTHER MAX DIMERIZATION, MAD 42 298 - -
Lele52g0945 302 MobiDBLite consensus disorder prediction 40 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0945 Lele-ChrLele52 6157238 6158637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0945 82 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.143 3.50e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g0945 HLH 1.7e-10 No_clan