Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0936 ATGGGTAGGGTTCCATGTTGTGGGGAGAGTAGTGGAGTGAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTTATGGAATATATCAGAAAGCATGGCCATGGAAGTTGGAGGACACTTCCAAAGCATGCTGGTCTCAATAGGTGTGGCAAGAGTTGCAGGCTCAGGTGGACTAATTATCTGAGGCCTGATATCAAGAGAGGTAAATTCTCTGAAGAAGACGAACGAATCATCATCAACCTTCATTCTGTTCTCGGAAACAAGTGGTCAAAGATTGCAGGCCATCTTCCCGGAAGAACAGATAATGAAATAAAGAACTATTGGAACACTCATATAAGGAAGAAGATGCTTCAGATGGGAATTGACCCAGAAACTCACAAACCCAGAACTGACTTCAATCAACTCATCAATCTCTCTCACTTGCTTGGAATCGTCTCATCAACCGATATGGCTCCATGGGGCAACAACAATAATAATCCTCTGGCTTCACAACTTGATCTCACTACTCAGCTAACCAAAATCCCACTTCTGCAAAACCTGTTACTAATTGCTAATTCAAACCCTAGCCTCTTAGGCAATAATAATAATCATACCCTCAACGTCCCACTTCAACTGCAATCTCTTATGAATGGGACTGTTGGAGTTCAAGAACATGCAAACCCAGATGGTTTATTATTTCCTCAAGCGCACAGTGAGAATCACGATGGTACTTCAAAGTCGTGGGCTGATGTACAAGGAGGATTATCATCCGGTTTTAATAATGGTAGCAACATTTGGAATATTATTCCACATCAGAGCCAATCGGAGATGACAATACCTGCTCTAGTCTCGGCGTCTCCCGTGACCGGCTCAGCCGCCAAGCAAACGGATGGTAGCTGCAATACAGCTCAAGAGACCACTGATCATCTGTCACCTAATTCCTCTACAATGTTTGAGAGTTGGGAAAAGCTCCTGGATGATGAAATAACTTGTTCTGACTGGAAGCAGATTCTTGAATTATCATCAACTTTGGCGTCGCCGATTTCGTGGTAG 1035 0.4357 MGRVPCCGESSGVKKGPWTPEEDEKLMEYIRKHGHGSWRTLPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEDERIIINLHSVLGNKWSKIAGHLPGRTDNEIKNYWNTHIRKKMLQMGIDPETHKPRTDFNQLINLSHLLGIVSSTDMAPWGNNNNNPLASQLDLTTQLTKIPLLQNLLLIANSNPSLLGNNNNHTLNVPLQLQSLMNGTVGVQEHANPDGLLFPQAHSENHDGTSKSWADVQGGLSSGFNNGSNIWNIIPHQSQSEMTIPALVSASPVTGSAAKQTDGSCNTAQETTDHLSPNSSTMFESWEKLLDDEITCSDWKQILELSSTLASPISW 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0936 344 FunFam Transcription factor MYB39 70 131 - -
Lele52g0936 344 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lele52g0936 344 Gene3D - 70 117 - -
Lele52g0936 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 285 - -
Lele52g0936 344 FunFam MYB-related transcription factor 14 67 - -
Lele52g0936 344 MobiDBLite consensus disorder prediction 287 308 - -
Lele52g0936 344 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele52g0936 344 CDD SANT 17 62 IPR001005 -
Lele52g0936 344 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lele52g0936 344 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lele52g0936 344 SMART sant 67 115 IPR001005 -
Lele52g0936 344 SMART sant 14 64 IPR001005 -
Lele52g0936 344 CDD SANT 70 113 IPR001005 -
Lele52g0936 344 Gene3D - 14 67 - -
Lele52g0936 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lele52g0936 344 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lele52g0936 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0936 Lele-ChrLele52 6088404 6090559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0936 1 333 MYB Transcription Factor Family AT5G16770 44.000 5.65e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele52g0936 Myb_DNA-binding 1.2e-17 CL0123