Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0931 ATGTCAATGTCAGCTGAAGCTCCCTCCAAGAAGCACAAACCTCGCGGTTCTCAGCCGAACCGGAGGAATCAAGTTGGAAACAAGTTCCGCTTCGTACCGAAATCTGAACTGGATTCTTCTAATTCTAAGTTTGATCGTTCGTTTAAAGGATTAAGCATTCGCGAGGAGGTTGATGTCGCGCAAGAATTGGACCAGGGGAACAAGCACGGTTCGGAGATGAAGAATGGAGTAGGAAATAAGAGAGAAGAGAATCATGTGGATGATTCAAACAAGGAAGGAAATAGTATTTATAGTAAACTGGATAAGCTAATGAGGGATGTAGGGGATCCGGAATTGTCAGAGGAACAGCAGAGTATAAATGATCAATTGCAAGCAGATGAGTTACTTGCTTTGGAGTCAATTTATGGAGAAAATGTCTTCAGCCTCGAGAGATGGAAAGGTCTCCGTTGTTTTCAGATACAAGTACACCTTGAAGTTTTAGATGAAATTGGCATCACAGCTAAGCTGAATTCTTCCAACGAACATAACACTGCAAGCATCAATGCAGATGACTTCTCATACTCTTTTAAAGTCCAATATCTTCCACCTATTATTATGACATGTTTATTGCCAAAGTCATACCCAAGCCATCAACCGCCGCATTTTCTAATTTCCGTGAAGTGGTTGGAATCCACAAGAATTTCTAGTCTATGCTCCATGTTAGATTCAATATGGACTGAGCAGCAAGGGCAGGAAGTTATATACCAGTGGGTAGACTGGTTACATGGTTTTTCTCTTTCTCATCTGGGATTTGATAAAGAGATTACTCTTGGTCCTTTTGGCATGAAACATGTTGGAGATGAGCGTGCAGTCTCAGGAGCGGTGTCCCTAGATTTTGATATTCCTTCATTACGAAGTTACAACAATGAGAAACATCATGAAAACTTCCTTAAAGAAATGCATGAATGTTGCATTTGCTTCAATGTATATGCAGGTAAGGAGATTGCTCAGTTACCATGTCAGCATTTTTTTTGCTTAAAATGCTTGCAGACCTTTGCTCAGATGCATGTAAAAGAAGGCACCATTAGTAATCTTCAATGTCCCAATTCAAAATGTGCTGTTATGATTCCACCTGCTCTGTTAAAACGCTTGCTCGATGATAAAGAGTATGAACGCTGGGAATCCTTGATGTTGGAGAAAACACTTGCATCAATGTCCGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGAACAGGATGCTCAATGCCCTAAATGCTTCTTTAGCTTCTGTACCCTGTGCAGGGAGCGACGCCATGTTGGCGTAGCATGCATGACCCTAGACATGAAGCTTCAAATTTTGCAAGAGCGCCAGAATTCGTCTCAATTAAAGGAAGCTCAGAAGCTGAGGGAACGTGAAAAGATTAATGAAATGCTCAGCATCAAAGAAATTAATCGTGATTCTAAGCTGTGCCCTTCTTGTCAAATGGCTATTTCCCGAACTGAAGGTTGCAATAAAATGGTGTGCGGTAATTGTGGCCAATATTTCTGTTACCGCTGCAACAAAGCACTTGATGAATCTGATCCTTACGGACATTTCAGGGATGGGTCCTGTGAATTGTTCCCACAAGAAATGGTAGAGGCTTGGCAAGAACGCATAAACCACCGTCAGGTGGTAGGACAGATACAAGCTGAAGTCTTTTTTCAACGTGGCCAGCGATGTCCTAATTGTCGTCAATTTAATGCAAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCATGCCAAAGCCATTATTGCTACTCTTGCAAGGAGATTGTTAGGCGTAGCACGCAGCATTATGGACCCAAGGGTTGCAAACAGCACTCCGATGATTAG 1872 0.4193 MSMSAEAPSKKHKPRGSQPNRRNQVGNKFRFVPKSELDSSNSKFDRSFKGLSIREEVDVAQELDQGNKHGSEMKNGVGNKREENHVDDSNKEGNSIYSKLDKLMRDVGDPELSEEQQSINDQLQADELLALESIYGENVFSLERWKGLRCFQIQVHLEVLDEIGITAKLNSSNEHNTASINADDFSYSFKVQYLPPIIMTCLLPKSYPSHQPPHFLISVKWLESTRISSLCSMLDSIWTEQQGQEVIYQWVDWLHGFSLSHLGFDKEITLGPFGMKHVGDERAVSGAVSLDFDIPSLRSYNNEKHHENFLKEMHECCICFNVYAGKEIAQLPCQHFFCLKCLQTFAQMHVKEGTISNLQCPNSKCAVMIPPALLKRLLDDKEYERWESLMLEKTLASMSDVAYCPRCETPCIEDEEQDAQCPKCFFSFCTLCRERRHVGVACMTLDMKLQILQERQNSSQLKEAQKLREREKINEMLSIKEINRDSKLCPSCQMAISRTEGCNKMVCGNCGQYFCYRCNKALDESDPYGHFRDGSCELFPQEMVEAWQERINHRQVVGQIQAEVFFQRGQRCPNCRQFNAKVGNNNHMFCWACQSHYCYSCKEIVRRSTQHYGPKGCKQHSDD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0931 623 MobiDBLite consensus disorder prediction 1 45 - -
Lele52g0931 623 SUPERFAMILY UBC-like 120 257 IPR016135 -
Lele52g0931 623 Gene3D Ubiquitin Conjugating Enzyme 113 263 IPR016135 -
Lele52g0931 623 SMART ibrneu5 384 442 IPR002867 -
Lele52g0931 623 SMART ibrneu5 471 536 IPR002867 -
Lele52g0931 623 ProSiteProfiles Zinc finger RING-type profile. 316 364 IPR001841 -
Lele52g0931 623 SMART ring_2 572 601 IPR001841 -
Lele52g0931 623 SMART ring_2 489 518 IPR001841 -
Lele52g0931 623 SMART ring_2 316 363 IPR001841 -
Lele52g0931 623 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Lele52g0931 623 Pfam IBR domain, a half RING-finger domain 384 442 IPR002867 -
Lele52g0931 623 Pfam IBR domain, a half RING-finger domain 478 522 IPR002867 -
Lele52g0931 623 Gene3D - 458 564 - -
Lele52g0931 623 FunFam RBR-type E3 ubiquitin transferase 311 395 - -
Lele52g0931 623 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 158 531 IPR031127 GO:0004842|GO:0016567
Lele52g0931 623 MobiDBLite consensus disorder prediction 59 94 - -
Lele52g0931 623 SMART RWD2001b 126 261 IPR006575 GO:0005515
Lele52g0931 623 Pfam RWD domain 122 255 IPR006575 GO:0005515
Lele52g0931 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 399 IPR013083 -
Lele52g0931 623 ProSiteProfiles TRIAD supradomain profile. 312 541 IPR044066 -
Lele52g0931 623 SUPERFAMILY RING/U-box 384 447 - -
Lele52g0931 623 FunFam RBR-type E3 ubiquitin transferase 457 566 - -
Lele52g0931 623 ProSiteProfiles RWD domain profile. 126 261 IPR006575 GO:0005515
Lele52g0931 623 SUPERFAMILY RING/U-box 311 395 - -
Lele52g0931 623 SUPERFAMILY RING/U-box 475 531 - -
Lele52g0931 623 SUPERFAMILY RING/U-box 564 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0931 Lele-ChrLele52 6062357 6066015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0931 315 529 C3H Transcription Factor Family AT2G31760 26.697 2.52e-17 83.6