Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0928 ATGGTTGGCTATGAGCTCTTTAAGATTGGTTCGGAGAGGTTTCCTTGGGGCCGCATATTCTGCATTGATGGGTGTATATTCATGTCGATAGGATGTGGAGTTGAGCCCGCTTTGCTCCGCAGCAAAGCGCTTTCCTACAGACAACGGTTATTTAGATTGTACTATGCTGCTTCTTCGGCAGTGATGTTGGAAGACTACGTATTTGATGAAAGTCCTACAGTAGATTATGCCAATGTAATGGTCAATTTTGGAAGAAATGGTATGAGAGTTTCTAGTCTTCAAAGAAAGTGCGGTTTATTTCCTATAGTGGTCTGGCTGATTAAAACCTCAAACTGGGCGACTGAACTTGCAAGAGATAAAATGTTCTGGAAAGCTGTAAGGTGGTACGGATTTTCTCATTCAATTTCTTCCTTTAAAATTATTATTCACATATATGCATCGGAAGGAATGCGTATGGAAGCATTTGCTTTGCTTAAAGATATTGTTGGATTCTATAGGAAAGCCAAGTTCGACACATTCAAATTGTTTTCTACTTTGTTAGATTCACCTCAGCATGAGGAACGGTCAATTGTTGTGTATGACATATTAATAAAAGTACTTGCATCCTATTCCATGCTTGATGACGCATTTGATGTGTTCATGAGAATTAAGCATCTGGGGTTTGAACCTGATATATTGTCGTGCAATTTCTTGTTGAAATGCTTGGTAGAAAAAAATCGGGTTGAGTTGGTTGGAAAATTATTTGAAGAGCTAAAAATCTCAGGCCCATCACCCAATATCTACACCTATACAATTATGATGAAATTCTACTGCGGAGGAGATTGTGGGCGGGACGTAGATATTGACCAAGCTACTGAGATTTTTGAAGCAATATTGAGGAATGGGGAAAAACCAACTGTTGTCACATGTAGTATTTATATTCGTGGACTTTGTAAACGTGGTTATGTTGCTGCTGCTCTGCAATTCATTTGTGATTGCAGGTATAGAAACCAGCCTCTGAATAGCTACTGTTTTAATCCAGTAATTTATGAATTTTGTCAAAAAGGTGAAATTGATGAAGCTTTGCAAGTCTGGCAAGAAATGCGGAGCTCAGGAGTATTGCCTGATGTTTGTAGCTACAGTATTTTAATCCATGCATTTTGTAAACAAGGGGATATAAAGAAAGGTTTTGACATGATTGATGAAATGAAACTTTATAATCTAAAACCATCGATAATTAGTTACACCTCCCTTATCTATGGTCTATGCAAGAGTAAGCGGATGGAACCTTCATTGTATTTGTTCCGGAGTATCGGTGCTTCTGGATACAAATATGATCAGGCTGCTTATGAAACTTTGATCAATGGATTTTGTCGTCAAGGTGATATGGATTCAGCCAAAAAGCTTTTGGAGGAGATGATTACAAATGATCTGGCTCCTACTTCTTTTGGTTTCCAGAGCATAATTGGAGGATTCTACAAACTGGGAGACTTAGACATGGCACTGGAAGTTCTGAATTCCATGCTACAAGGTGGTCTCTTGCCAAATACCATCACTTGCAATTTTATTATCGATGGACTCTGCAGAGAAGGCTGTTTCATGGAAGCCTTGACACTACTGGAAGAGTTCCAAGACCAAGGAATTAACCTTTCATATAACGCTGTCATCCACAGGCTTTGCAAGGGAGGACATTTAGAAAGGGCATGGGAGCTCCTTCCAAGAATGATGAAAAGGAATGTACTTCCCGGAGTTGTTAATTATACAATTCTCATTGATGCTTTTGCCAAACAATCTAATCTAAAGAAGGCCTTATGGTTATACACAAAAATGCTGAAAGTTGGAGTCACTCCCAACACCATCACTTATACAGTCCTTATTAACATCTTTTGCCGTGTGGGCAAAATGCGTGAAGCATTTGGTTTTTACAAGGAAATGATAAAAGGTGGTTTGAATCCAGATCAGATTTCATATACATCTTTAATAGCTGGTTTTTGTAGTGCGGGAGATATGAGAAGTGCCTGGGTAGTATTCGAAGAAATGAGGAAAGGCTTTTCACCTGATTTATTTACCTATACATGTTTGATAGATGGATTTTGCAAGTTAAACCGCATAGATAACGCCTCTTTTCTGTTTGATGAAATGAACAGAAAAGCAGTTACTCCTAATGTTGTCACTTACACTGTTCTCATTTCTTGGTACCGTAACCATGGATATGCAGATGAGGCACATAGGTTATATCGTGAAATGATTGTAAAGGGTATTTCACCAGATGATATAACTCATATGGTTCTTTTGAAACGCAGCAGAGCAGAAGCCAAGCCGCATGACTGCAGCCAATTACAGAATTTGGATTCATGTCCTAGTCCTGGTGCTGAAGTGGTAAGGGAAGCAAGCTTCATCTCTCAATTTGGGGGTCTTATCATCAGCCTGGACCACTATGAACTTGGACCACAACAGTTGGTTTCTATTTTCTTTTGCCCTTACATTATGCGGGGAGCTGCAACATATATCTTTCATAATCAAATATCTCATATGGATGGAGAGAATAAGAGCAGTGGAGACGACGGGGATGTCCAGATGGTGGCTCCGGCGCCGGCGCCCATTTCTAATGCGAACCCTCCACCGCCGTTCCTTAGTAAGACGTATGACATGGTGGATGACCCGGCCTCTGATGCGATCGTGTCTTGGAGCCCAACCAACAACAGCTTCGTGGTTTGGAACCCACCAGAGTTTGCCAGAGATCTCTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTTGTGAGGCAGCTGAACACTTATGGTTTTCGGAAGGTGGATCCAGATCGATGGGAATTTGCAAATGAGGGCTTTTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATTACTCGACGAAAACCTGCCCATGGCCATAATAATCAACAAACACAGCACTCACATGGACAGAATTCATCAGTAGCTGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAAGAAGAGGTTGAGAGGCTTAAAAGAGACAAGAACGTGCTCATGCAAGAGCTTGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGCTGCAGACAATGGTTCAGCGCCTTCAGGGAATGGAACAACGACAACAGCAAATGATGTCATTCCTTGCCAAGGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAGAATGAGAGCAATAGACGCATAACTGAAGCCAACAAAAAACGGCGGCTTAAACAGGAAGGTATTGCTGAAACAGAATGTGCTCCTGCTTCTGATGGACAAATTGTTAAGTATCAACCTCTGATGAATGAAGCGGCAAAGGCAATGCTAAGGAAGATAATGAAATTGGATACTTCACGGCCGGAATCTTTTAATAACAACCCTGATAACTACATCATTGGGAATGGTTCATCATCATCCAATGCAATGGACAGTTGTAGCTCTTCAAGCTGGACTTCTGGAGTTACACTTCAAGAGGTCCCGCCAACTTCAATTCAGTCTTCTCACATTCCAGCTGCGTCAGGAACTTCGGGACCCTCAGCTGACAAATCCAAAATCCCGTCTACAAAAACTGCACCTGCTGTCTCTGCTCCTCAGGGAGATGTCATGATACCTGAGCTTTCGTCCATACCAGAGATGGTAACAGAAAGTTTTCCTGATGTTCCTGGAGAAAATTATGTGAGACCTGCAATGGACAACGCGGATCCTTCTTCATTGGGAGTGAATGGGTCATTGCCCAGTGATGTTGATGGTGTTTCTACTGATGCAGACTGCATTGATGAGTTGTTACGCAATCCTTTCTTTTGGGATGATTTTCTTCTGCAAAGTCCATTGCCTGAGGATATCGAGATTAATGCTGCCGAAGCAGTGTCCGATGAGGTGCAGCCAATGGAAGACGGGTGGGACAAAACTGAACACATGAGCCAACTTACAGAGCAGATGGGTCTTCTTTCTTCAGATCCAAGAGCAGGTTGA 3975 0.4194 MVGYELFKIGSERFPWGRIFCIDGCIFMSIGCGVEPALLRSKALSYRQRLFRLYYAASSAVMLEDYVFDESPTVDYANVMVNFGRNGMRVSSLQRKCGLFPIVVWLIKTSNWATELARDKMFWKAVRWYGFSHSISSFKIIIHIYASEGMRMEAFALLKDIVGFYRKAKFDTFKLFSTLLDSPQHEERSIVVYDILIKVLASYSMLDDAFDVFMRIKHLGFEPDILSCNFLLKCLVEKNRVELVGKLFEELKISGPSPNIYTYTIMMKFYCGGDCGRDVDIDQATEIFEAILRNGEKPTVVTCSIYIRGLCKRGYVAAALQFICDCRYRNQPLNSYCFNPVIYEFCQKGEIDEALQVWQEMRSSGVLPDVCSYSILIHAFCKQGDIKKGFDMIDEMKLYNLKPSIISYTSLIYGLCKSKRMEPSLYLFRSIGASGYKYDQAAYETLINGFCRQGDMDSAKKLLEEMITNDLAPTSFGFQSIIGGFYKLGDLDMALEVLNSMLQGGLLPNTITCNFIIDGLCREGCFMEALTLLEEFQDQGINLSYNAVIHRLCKGGHLERAWELLPRMMKRNVLPGVVNYTILIDAFAKQSNLKKALWLYTKMLKVGVTPNTITYTVLINIFCRVGKMREAFGFYKEMIKGGLNPDQISYTSLIAGFCSAGDMRSAWVVFEEMRKGFSPDLFTYTCLIDGFCKLNRIDNASFLFDEMNRKAVTPNVVTYTVLISWYRNHGYADEAHRLYREMIVKGISPDDITHMVLLKRSRAEAKPHDCSQLQNLDSCPSPGAEVVREASFISQFGGLIISLDHYELGPQQLVSIFFCPYIMRGAATYIFHNQISHMDGENKSSGDDGDVQMVAPAPAPISNANPPPPFLSKTYDMVDDPASDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHNNQQTQHSHGQNSSVAACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEANKKRRLKQEGIAETECAPASDGQIVKYQPLMNEAAKAMLRKIMKLDTSRPESFNNNPDNYIIGNGSSSSNAMDSCSSSSWTSGVTLQEVPPTSIQSSHIPAASGTSGPSADKSKIPSTKTAPAVSAPQGDVMIPELSSIPEMVTESFPDVPGENYVRPAMDNADPSSLGVNGSLPSDVDGVSTDADCIDELLRNPFFWDDFLLQSPLPEDIEINAAEAVSDEVQPMEDGWDKTEHMSQLTEQMGLLSSDPRAG 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0928 1324 Gene3D Tetratricopeptide repeat domain 277 397 IPR011990 GO:0005515
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Lele52g0928 1324 Gene3D Tetratricopeptide repeat domain 543 661 IPR011990 GO:0005515
Lele52g0928 1324 Gene3D Tetratricopeptide repeat domain 662 773 IPR011990 GO:0005515
Lele52g0928 1324 PRINTS Heat shock factor (HSF) domain signature 870 893 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0928 1324 PRINTS Heat shock factor (HSF) domain signature 921 933 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0928 1324 PRINTS Heat shock factor (HSF) domain signature 908 920 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0928 1324 SUPERFAMILY TPR-like 559 745 IPR011990 GO:0005515
Lele52g0928 1324 SUPERFAMILY "Winged helix" DNA-binding domain 865 959 IPR036390 -
Lele52g0928 1324 Gene3D Tetratricopeptide repeat domain 398 467 IPR011990 GO:0005515
Lele52g0928 1324 Gene3D Tetratricopeptide repeat domain 468 542 IPR011990 GO:0005515
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Lele52g0928 1324 MobiDBLite consensus disorder prediction 960 979 - -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Lele52g0928 1324 Gene3D - 862 960 IPR036388 -
Lele52g0928 1324 Pfam PPR repeat 333 362 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat 435 466 IPR002885 -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Lele52g0928 1324 MobiDBLite consensus disorder prediction 1161 1197 - -
Lele52g0928 1324 Pfam HSF-type DNA-binding 870 959 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat family 223 271 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat family 544 589 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat family 368 417 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat family 679 724 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat family 610 659 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat family 473 522 IPR002885 -
Lele52g0928 1324 ProSitePatterns HSF-type DNA-binding domain signature. 909 933 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 539 IPR002885 -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 676 IPR002885 -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 298 IPR002885 -
Lele52g0928 1324 MobiDBLite consensus disorder prediction 962 979 - -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Lele52g0928 1324 PANTHER ATPASE EXPRESSION PROTEIN 3 118 539 - -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Lele52g0928 1324 SMART hsfneu3 866 959 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0928 1324 MobiDBLite consensus disorder prediction 1161 1195 - -
Lele52g0928 1324 Gene3D Tetratricopeptide repeat domain 115 276 IPR011990 GO:0005515
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 479 510 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 717 750 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 580 612 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 442 474 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 511 542 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 191 225 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 544 575 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 648 680 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 682 715 IPR002885 -
Lele52g0928 1324 TIGRFAM PPR: pentatricopeptide repeat domain 336 370 IPR002885 -
Lele52g0928 1324 FunFam Heat shock transcription factor 1 863 960 - -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Lele52g0928 1324 Coils Coil 988 1015 - -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Lele52g0928 1324 MobiDBLite consensus disorder prediction 1300 1324 - -
Lele52g0928 1324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Lele52g0928 1324 Pfam PPR repeat 191 221 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0928 Lele-ChrLele52 6045618 6054291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0928 856 1318 HSF AT1G32330 56.263 9.65e-161 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele52g0928 HSF_DNA-bind 1.3e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0928 52 6045618 6054291 Lele52g0928 52 6045618 6054291 ECH
Lele50g0950 50 6005865 6008090 Lele52g0928 52 6045618 6054291 hybridization