Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0921 ATGGCCTCATCCTCTTGCCACGAACCAGAACTCATCGATAACGCCGTCGTTATGCATTTACCCAAATGCCCTTCAAGTTACAGGAGGGTTTACCTCTGGGATTTGGATATAGTTTGTGATTGTTTTCGCGATTTCTCCTTCAAGTCTGTAAAGACGGAGGCCTACAAGGAGCGACTTCGTAATGAAATGGTGAAAAGAAGACTTTCTTTATCTAAGGAAGCTAGACATGGGCTAGAATTTTTGAAGCGTAAAAGGCTTCAACGGGCAAAACTCATTACTGCCTCAGAAACCACTGTTGCTAGCACAATGACTAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCTTCGTGTGGTGGTGTAAGGTTTCATGGCAATGCAGATGTCTTCTCAAAGCGGAAGGTGGATAAGTTTGAGACAAGTGATCTTGAATGGACTGAGAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTCGAGGATCCTCTAGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATTATTTCACCTCTGAGTGCGTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAAGGCAGGATTCAAGTTTACAACTAGAGTACAGCCTGTTCGCCTTGCTGAGTGGGACACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGCAATTATACATTCCGTGATTTTGAGAAAATGGCGAATAGAGTTTTTGCACATAGATATTCTAGTGCTGGATGTCTTCCTGCCACATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGACAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCATCTTCTCCTAGTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGAAAGTTTCACGGTTGCCCAAGTCCATTTTGCGCCTCTTGGAAACAGCAATTCCGGGAGTAACAGAACCCATGCTGTACATTGGAATGCTCTTCAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGTATAAATTATCAACACTGTGGGGCATCAAAAACTTGGTACGGCATTCCAGGTCATGCAGCATTGGATTTTGAAAGGGTGGTGAGAGAGCATGTGTACTCTAAAGATATTCTTTCTAGTGATGGGGAGGATGGAGCTTTCGATGTTCTTCTGGGGAAAACAACTCTGTTCCCTCCAAATATTTTGTTGGATAATGAAGTCCCTGTCTATAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACTTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTATTGCTAGCCAGCGATATGCGCTTCTTAACAGGATGCCTCTGCTACCTCATGAAGAACTTCTATGCAAAGAAGCAATGCTCCTTCATACAAACTTAGAACTTGTAGATTCAGACTTTCCCTCTGCAGATCTGTTGGCTCATAATTGCATAAAGATTTCTTTTGTGAATCTAATGCGCTTTCAGCATTGTGCTCGTTGGCTCCTAATGAAATCCAGGTCTTGTTCGAGTGTTTTTCCACATTCCTACAGCACAATTCTCTGTAGCCTCTGCAGACGCGATTGTTATGTTGCATATGTAGACTGTGAGTGTCACATGCACCCGGTGTGCCTTCGCCATGATATTGAAGCTCTTGGCTTAACCTGTGGGAGCGACCACGCTCTTTATGTGAGGCAGGATATTAGTGATCTGGAAGCTGCATCCAAGAGGTTTGAGCAGGGAGATGGAATCGTGGATGAGATTCTTAAGCAAACCAAGGGTGACAATAACATGTATTCATATCCTTTGTCAAATATGTTCCAGAGAGCTGAAGCAAATGGATATACTCCTTATTGCGAGATAGAACCTGATCCTTTTATTGAACATTATTCAACCCCAGATCAGGCAACAAGTAATACAGAGCGCAATTTACAAAGTCAACTTGTTTTGAGGCACTGCCCAGATCTTAAACCAGAAGTCTGCGAGGCTTCTTTTTCTTCTGCTGCATCCACTCTGTGTTCTCTTTCAGAACCTTTTGATAGGTCTTCTGCTCTCAAAAATGACGATGGGCATGCTTCTTATTTTACTTCTGGCTCTATTGATTCTGAAGAATGTTGTGAAGGAGTATCGAATAGCGCGTGCCAGTCTTTACTATCCTCTGTGCGCTACCATGAAATCTCAAGTAAACCTCTGCGTAATCTCGATGAATTAGATGTGATGCCCATTGTGGATAAAGAGGATAACGATTCTGATTCAGAAATATTTAGGGTAAAGCGGCCATCTTCTCTGAAGGCAGAGAAGAGAAATTTGAATGCCACCATGTCTTCCAAGCATTCGGACCAACAGGGGCTTAAACGACTGAAGAAAGTTAACGAAGGAAGTAACCCGCCACAAGCAATGGATTGCAGCAGAAGCAATGATTCAAGTAACAAATTCAATGAGCCGATGAAACGGAAATTTGAGGGTGAAAGATCGGTGAAGGACAAATTTGGAGGAGGAAATAGCATTCCCATATCTGTGAGGTATAAGAAGCTGGGCAACGAGGGAGTTAGTAGGGAGCGAGATCAGCACAGGAAATATAGGGAACGGCCTCCCTTTGAGATGGGGCCCAAGCGCCTTAAAGTGCGAGGCCCTTCCTTCTTGAGCTTAGAGAGTGCTGGTTTTGCCTCTAAATGGTAA 2757 0.4276 MASSSCHEPELIDNAVVMHLPKCPSSYRRVYLWDLDIVCDCFRDFSFKSVKTEAYKERLRNEMVKRRLSLSKEARHGLEFLKRKRLQRAKLITASETTVASTMTRSGGDALRASASCGGVRFHGNADVFSKRKVDKFETSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPVRLAEWDTEDKVTFFMSGSNYTFRDFEKMANRVFAHRYSSAGCLPATFLEKEFWHEIACGQMETVEYACDVDGSAFSSSPSDQLGNSKWNLKKVSRLPKSILRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALDFERVVREHVYSKDILSSDGEDGAFDVLLGKTTLFPPNILLDNEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLNRMPLLPHEELLCKEAMLLHTNLELVDSDFPSADLLAHNCIKISFVNLMRFQHCARWLLMKSRSCSSVFPHSYSTILCSLCRRDCYVAYVDCECHMHPVCLRHDIEALGLTCGSDHALYVRQDISDLEAASKRFEQGDGIVDEILKQTKGDNNMYSYPLSNMFQRAEANGYTPYCEIEPDPFIEHYSTPDQATSNTERNLQSQLVLRHCPDLKPEVCEASFSSAASTLCSLSEPFDRSSALKNDDGHASYFTSGSIDSEECCEGVSNSACQSLLSSVRYHEISSKPLRNLDELDVMPIVDKEDNDSDSEIFRVKRPSSLKAEKRNLNATMSSKHSDQQGLKRLKKVNEGSNPPQAMDCSRSNDSSNKFNEPMKRKFEGERSVKDKFGGGNSIPISVRYKKLGNEGVSRERDQHRKYRERPPFEMGPKRLKVRGPSFLSLESAGFASKW 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0921 918 Pfam jmjN domain 152 184 IPR003349 -
Lele52g0921 918 MobiDBLite consensus disorder prediction 873 899 - -
Lele52g0921 918 Pfam C5HC2 zinc finger 548 599 IPR004198 -
Lele52g0921 918 MobiDBLite consensus disorder prediction 816 840 - -
Lele52g0921 918 PANTHER LYSINE-SPECIFIC DEMETHYLASE 143 838 - -
Lele52g0921 918 Pfam JmjC domain, hydroxylase 328 451 IPR003347 -
Lele52g0921 918 ProSiteProfiles JmjC domain profile. 298 468 IPR003347 -
Lele52g0921 918 SMART cupin_9 295 468 IPR003347 -
Lele52g0921 918 Gene3D Cupin 144 473 - -
Lele52g0921 918 MobiDBLite consensus disorder prediction 822 836 - -
Lele52g0921 918 ProSiteProfiles JmjN domain profile. 151 192 IPR003349 -
Lele52g0921 918 FunFam Lysine-specific demethylase isoform A 146 495 - -
Lele52g0921 918 SUPERFAMILY Clavaminate synthase-like 289 484 - -
Lele52g0921 918 SMART JmjN_1 150 191 IPR003349 -
Lele52g0921 918 MobiDBLite consensus disorder prediction 873 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0921 Lele-ChrLele52 5979793 5987169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0921 148 486 JUMONJI Transcription Factor Family AT1G30810 36.658 6.30e-63 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele52g0921 JmjC 2.4e-38 CL0029