Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0914 ATGGGTAGCGGTGACATGGATAAAACTCCAAAAGAGAAGGAGCCAAAGACACCTCCGGCTATGTCACAGGAGCAGTCTTCAACTCCTGGCACTGGAACAATTAATCCTGATTGGTCCAGCTTTCAGGCATATTCTCCAATGCCTCCACATGGGTTCTTAGCATCAAGTCCCCAAGCTCACCCATATGTGTGGGGTGTCCAACATATTATGCCTCCTTATGGTACCCCACCTCATCCCTATGTTGCAATGTATCCTCATGGTGGTATATACGCTCATCCATCTATGCCTTCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAATGGTATTGCTGAGCCTTCAGGCAATACTCTTGGCAACATGGAAACTGATGGTAAGCCTCCTGAGGTGAAGGAAAAATTGCCGATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATTACGGGAAAGAATGTTGAACATAGTAAAACACCAGGGACATCTGCTAATGGAGTTCATTCAAAAAGCGGTGAAAGTGCAAGTGAAGGCACTAGTGAAGGAAGTGATGCAAATTCTCAGAATGACTCACAGCTGAAATCAGAGGGAAGGCAGGACTCTTTGGGAGGTCTGACATGTTTATGCTTTGTTTTTCTGACTGAACCATCTCAAAATGGAGGTTCAGTTCATGCTTCTCAAAATGGGGGACTTAACGCACCTCACAATATGGTCAATCAACCTATGAGCATCATGCCTATCTCTGCTGCTGGTGCTCCTGGTGGAGTTTCTGGTCCCACGACAAATTTAAATATAGGAATGGATTATTGGGGTACACCTACTTCATCCACTATTCCTGCTATGCGTGGAAAGGTTCCTTCTACTGCTGTTGCTGGAGGAATGGTTACTGCTGGATCACGGGAGAGTGTTCAGTCACAACTTCGGCTGCAGGATGAAAGAGAGCTAAAGAGACAAAGACGAAAGCAGTCTAATAGGGAATCAGCTCGCAGGTCTAGGTTGCGCAAGCAGGCTGAATGTGATGAACTAGCCCAGCGAGCTGAGGTGTTAAAAGAAGAGAATGCTTCTCTTCGCTCTGAAGTGAATCGGATAAGGAGTGAGTACGAGCAGCTGCTCTCAGAAAATGCTGCCCTCAAGGAAAAACTTGGGGAATCACCTGAGAATGAGGAGCGTAGGCCTAGCCGGAATGACCAACATGTGGATAGTGACTCTCAACAGACTGAGCAGAAAGAAGCCGTGCAGGGAAGTCATTAA 1260 0.4619 MGSGDMDKTPKEKEPKTPPAMSQEQSSTPGTGTINPDWSSFQAYSPMPPHGFLASSPQAHPYVWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSMPSGSYPFSPFAMPSPNGIAEPSGNTLGNMETDGKPPEVKEKLPIKRSKGSLGSLNMITGKNVEHSKTPGTSANGVHSKSGESASEGTSEGSDANSQNDSQLKSEGRQDSLGGLTCLCFVFLTEPSQNGGSVHASQNGGLNAPHNMVNQPMSIMPISAAGAPGGVSGPTTNLNIGMDYWGTPTSSTIPAMRGKVPSTAVAGGMVTAGSRESVQSQLRLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEVNRIRSEYEQLLSENAALKEKLGESPENEERRPSRNDQHVDSDSQQTEQKEAVQGSH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0914 419 MobiDBLite consensus disorder prediction 382 408 - -
Lele52g0914 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 317 380 IPR004827 GO:0003700|GO:0006355
Lele52g0914 419 CDD bZIP_plant_GBF1 320 370 IPR045314 GO:0003700|GO:0006355
Lele52g0914 419 MobiDBLite consensus disorder prediction 1 18 - -
Lele52g0914 419 SUPERFAMILY Leucine zipper domain 318 374 IPR046347 GO:0003700|GO:0006355
Lele52g0914 419 MobiDBLite consensus disorder prediction 377 419 - -
Lele52g0914 419 Pfam Disordered region downstream of MFMR 135 282 - -
Lele52g0914 419 MobiDBLite consensus disorder prediction 309 324 - -
Lele52g0914 419 MobiDBLite consensus disorder prediction 300 339 - -
Lele52g0914 419 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Lele52g0914 419 MobiDBLite consensus disorder prediction 125 201 - -
Lele52g0914 419 Coils Coil 335 383 - -
Lele52g0914 419 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 410 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lele52g0914 419 Gene3D - 318 372 - -
Lele52g0914 419 MobiDBLite consensus disorder prediction 19 41 - -
Lele52g0914 419 MobiDBLite consensus disorder prediction 146 201 - -
Lele52g0914 419 Pfam bZIP transcription factor 315 377 IPR004827 GO:0003700|GO:0006355
Lele52g0914 419 MobiDBLite consensus disorder prediction 1 41 - -
Lele52g0914 419 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 322 337 IPR004827 GO:0003700|GO:0006355
Lele52g0914 419 SMART brlzneu 315 379 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0914 Lele-ChrLele52 5906011 5911302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0914 1 413 bZIP Transcription Factor Family AT2G35530 61.429 6.11e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele52g0914 MFMR_assoc 1.1e-55 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0914 52 5906011 5911302 Lele52g0914 52 5906011 5911302 ECH
Lele49g0889 49 5494407 5499669 Lele52g0914 52 5906011 5911302 hybridization
Lele50g0931 50 5869442 5874391 Lele52g0914 52 5906011 5911302 hybridization