Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0894 ATGCTTAGAAGGGGTAGATCTTCGATTGACTGCGGCCATCGTCGTGCTAGATCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTGTCTCATCATCTTCGTCCACCCTTGACCTCTAATTTTATTTGTGTTCCAAACTCCTCCTCCTCCTGGGAGTGTTATCCCTTACTCAATACTAATCCTCAAAACAACTTAAACTCACTCCCTCTCTCTCATTCCTCTCAAATTCTTCCTCCCAAGAGAGACAGAGAGAGAGAGGGGGGGAGAGTTTTAGAGAGAAAGAGAGAGAAAATGGCAGCTTTCACAGTGTACACAACACAATCTCTCAACACAAATTCCTCCTTCACAACCCCACCAAAATCCCACTTGGGTTTTCACCAAAAACAGGTTCTTTTCTACAGAAGCAGAACCAGCAGCAGAAGTAATATCGGTAGCAGCAGACCATGGGTGATCACATGCGCTGCAGGTGACTCACAGACAGTGGTGATTGGTCTAGCAGCAGACTCAGGATGTGGGAAGAGTACCTTCATGAGGAGGCTTACCAGTGTGTTTGGAGGAAAAGCAGAACCACCAAAAGGAGGGAATCCAGATTCCAACACACTGATAAGTGACACAACCACAGTGATATGTTTGGATGATTATCATTCTCTTGACAGAACAGGAAGGAAGGAAAAGGGAGTCACAGCACTTGACCCAAGAGCCAACGATTTTGATCTCATGTATGAACAAGTTAAGGCCATCAAAGAAGGCATTGCTGTTGAGAAACCCATTTACAACCATGTCACTGGTCTCTTGGACCCACCTGAGCTCATCAAGCCACCCAAGATCTTGGTCATCGAAGGCTTGCACCCAATGTTTGATCCTCGGGTCAGAGAACTATTGGACTTCAGCCTTTACTTGGACATCAGCAATGAGGTGAAATTCGCCTGGAAAATTCAGAGAGACATGGCAGAACGTGGGCACAGCCTCGAAAGCATAAAAGCTAGCATCGAAGCAAGAAAACCCGATTTCGACGCATATATTGATCCTCAGAAGCAATATGCAGATGCAGTGATAGAAGTGTTACCAACACAGTTAATACCAGACGATAATGAAGGGAAGATATTGAGAGTGAGATTGATACAGAAAGAAGGGGTTAAGAATTTCAGCCCAGTTTACTTGTTTGATGAAGGCTCTACCGTTTCCTGGATTCCTTGTGGAAGGAAGCTCACTTGCTCTTACCCTGGCATCAAATTCTTCTATGGTCCTGAAACTTACTACGGTCACGAGGTATCACTTGTAGAGATGGATGGGCAATTTGACAGACTAGATGAGTTAATATACGTTGAGAGCCATCTAAGCAACCTGTCAACCAAGTTCTATGGAGAAGTTACACAACAAATGTTGAAGCATGCCGAGTTCCCCGGCAGCAACAACGGCACCGGTCTCTTCCAAACCATAATTGGCTTGAAGATCAGAGATCTCTTTGAGCAGATTGTAGCAAGCAGGTCTCAGACACCAGTAAAAGCGGCTAAAGCTTAA 1524 0.4521 MLRRGRSSIDCGHRRARSPLPLPLPLPLPLSHHLRPPLTSNFICVPNSSSSWECYPLLNTNPQNNLNSLPLSHSSQILPPKRDREREGGRVLERKREKMAAFTVYTTQSLNTNSSFTTPPKSHLGFHQKQVLFYRSRTSSRSNIGSSRPWVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGKAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKEGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRELLDFSLYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKNFSPVYLFDEGSTVSWIPCGRKLTCSYPGIKFFYGPETYYGHEVSLVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHAEFPGSNNGTGLFQTIIGLKIRDLFEQIVASRSQTPVKAAKA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0894 507 CDD PRK 163 452 - -
Lele52g0894 507 Pfam Phosphoribulokinase / Uridine kinase family 163 361 IPR006083 GO:0005524|GO:0016301
Lele52g0894 507 MobiDBLite consensus disorder prediction 70 90 - -
Lele52g0894 507 ProSitePatterns Phosphoribulokinase signature. 312 325 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele52g0894 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 431 IPR027417 -
Lele52g0894 507 PRINTS Phosphoribulokinase family signature 277 295 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele52g0894 507 PRINTS Phosphoribulokinase family signature 312 329 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele52g0894 507 PRINTS Phosphoribulokinase family signature 168 185 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele52g0894 507 PRINTS Phosphoribulokinase family signature 330 353 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele52g0894 507 FunFam Phosphoribulokinase 158 388 - -
Lele52g0894 507 Gene3D - 158 394 IPR027417 -
Lele52g0894 507 PANTHER URIDINE KINASE 153 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0894 Lele-ChrLele52 5796177 5800696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0894 215 389 PRT Gene Family AT3G27440 25.843 1.50e-15 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0877 49 5413205 5416325 Lele52g0894 52 5796177 5800696 hybridization
Lele50g0915 50 5761979 5764729 Lele52g0894 52 5796177 5800696 hybridization