Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0879 ATGGCCGAACTCGTGTTCTGTCTGTCCCACTCCGAGCAGCGGAAGAAACAAACTGAAATGAGCATTCCGCCGGCCATGTGGACGGGACTCCAGCCACCGCTGTTCACGATGGCCCAGTGGCAGGAGCTTGAACACCAAGCTCTAATCTTTAAGTATCTCAAAGCCGGATTATCCGTTCCCCCTGACCTTCTCGCTCCGATTCACAAGAGCCTCCAATTGATGCCGGTTCCTCATTCAGCTCTGGGTTACAGCTCCTACTTCGGGAAGAAGATAGACCCAGAACCGGGACGGTGCCGGAGGACCGACGGCAAGAAATGGAGGTGCTCGAGAGACGCACACCCAGATTCTAAGTACTGTGAGCGACACATGATTCGCCGTCGTCATCGTTCAAGAAAGCCTGTGGAAGCATCACAAGCTACTCATCCTCCTTCTGCTCAGTCATCGGAGGTTAGTGGTGGGACCGGAAGTGGTGTTGGAAACTCATTCCCCAGCCTACCTCTGCACACAAATGGCACTCGTGAGGGTATAAACCTCGGAGGAAACAACGTATCTCAGCTTCAGGTTGAATCTCTTCCCAGTGAGATGAACAAGAAAGAGTACAGGTTTGGAATGCAATCTGAAGTAGATGAGCATGACTTCTTTCCAAAAGACATGGGAAATGTGAGGTATCTTGGTTTTGACTCTTCCTCGGACAGCATGTGGTCTCAACTGTCTCACATTTCCTCGAACGCTGTCTCTGAATCGAGCGATAGCTCTGTCATGGCTAGCAACTGCTTTCAACTGCAAGGAATGCCGGATACTGAGCCGCGGGCATCGAACGTGACATCCAAGCAACTCTTGTTCAGTGGCCAGTTAGGTTCAACTGGTTGCTTGAAACAGGACTATCAGTCATCTCAGACTCTGATCAATGCTTGGCCATGGAAGAAGGAGTTAGGCTCGCCTGTGATGGAGTACAGACCGAGTAAGGATGCTAACGGCAACCCGGATGTTAATGTTGATTGCTGTGGATCTCTGTAA 1017 0.5084 MAELVFCLSHSEQRKKQTEMSIPPAMWTGLQPPLFTMAQWQELEHQALIFKYLKAGLSVPPDLLAPIHKSLQLMPVPHSALGYSSYFGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCERHMIRRRHRSRKPVEASQATHPPSAQSSEVSGGTGSGVGNSFPSLPLHTNGTREGINLGGNNVSQLQVESLPSEMNKKEYRFGMQSEVDEHDFFPKDMGNVRYLGFDSSSDSMWSQLSHISSNAVSESSDSSVMASNCFQLQGMPDTEPRASNVTSKQLLFSGQLGSTGCLKQDYQSSQTLINAWPWKKELGSPVMEYRPSKDANGNPDVNVDCCGSL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0879 338 SMART QLQ_2 33 69 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele52g0879 338 ProSiteProfiles WRC domain profile. 92 136 IPR014977 -
Lele52g0879 338 Pfam QLQ 35 67 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele52g0879 338 Pfam WRC 93 135 IPR014977 -
Lele52g0879 338 ProSiteProfiles QLQ domain profile. 34 69 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele52g0879 338 PANTHER GROWTH-REGULATING FACTOR 5 16 239 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lele52g0879 338 MobiDBLite consensus disorder prediction 137 180 - -
Lele52g0879 338 MobiDBLite consensus disorder prediction 93 121 - -
Lele52g0879 338 MobiDBLite consensus disorder prediction 93 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0879 Lele-ChrLele52 5709495 5711791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0879 20 138 GRF Transcription Factor Family AT3G13960 54.762 8.44e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele52g0879 WRC 7.8e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0865 49 5352585 5356751 Lele52g0879 52 5709495 5711791 hybridization
Lele50g0899 50 5657502 5659817 Lele52g0879 52 5709495 5711791 hybridization