Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0876 ATGTTTACGTGCATAGCATGTACGAAGCAAACGACGGACGACAGGGAAGAAGAAGAAGGTGGACGTGACAGCGGCACACCCAGTACGAAAGAGGCCGTCAAGGGCCTGACGGCGCAGTTGAAAGATATATTCATTAAGCAATGCAAACCCTGCACGGGGTCCCCTAGCTACAAAAAAGGGCAGAGACCTTTTCCAGACTTCGATACTATATCTGAAGGGGTTCCATATCCTTACATTGGAGGGGCTAGTTCAAGTTCAACCCCTGCTTGGGACTTTACAAGCTCCCGTTACCCAGGGGGTCGATCTGACCCAAGATTTGGTGGGGCTGCACGAGACTCTACAGTATCAGTACAATCATGTGATGTAGTTTTAGAGGAGGAGGACGAACCCAAGGAGTGGATGGCTCAGGTGGAACCTGGTGTTCACATCACATTCGTGTCTCTTCCCAATGGAGGGAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATGTTCAATAAATGGCAAGCTCAGAGATGGTGGGGTGAGAATTACGACCGGATCATGGAACTGTATAACGTGCAAAGATTCAATCGACAAGCTTTTCAAACTCCCTCGAGGGCTGATGATGAGGCAAGGGATTCTTCATATACGAGACTGGGATCAGCGCGGGAGAGCAAGGAGTGGACCCCACGGCATCACTATAGACCCTCAGGATACAGAGGAGGACACTACCCTTCTGACCATTTTGATCAGGCAGGCTCGTCCATGGAACCACCCCGCCCAACCACCGATTCTGTAAATGAACCTTCTGTCAGTAATGCCGGTGACATGGAGGCAGAGTGGATTGAGGAAGATGAGCCTGGCGTCTACATCACTATCCGACAATTAGCTGATGGTACCAGGGAGCTCCGACGTGTCAGATTCAGGGCTCGCCTCCCCACTACTTGCATTGCATCACCACAGAGACAGAATCTTGACGCGCAAGCAACAACTCCAAAACTGAGCACAATCAAGCGCGCTAATGTTATAAAAACTCACCAGGTATATAAAATAATAAACAAAGTAGCAAATCGGCAAAGCTCAGGCTATGTTCCCCCCGGCACAAGAGATACAAACACCCAGTCAAATGCAAAACAAGCGCATAAGTTTTAG 1134 0.4921 MFTCIACTKQTTDDREEEEGGRDSGTPSTKEAVKGLTAQLKDIFIKQCKPCTGSPSYKKGQRPFPDFDTISEGVPYPYIGGASSSSTPAWDFTSSRYPGGRSDPRFGGAARDSTVSVQSCDVVLEEEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQAFQTPSRADDEARDSSYTRLGSARESKEWTPRHHYRPSGYRGGHYPSDHFDQAGSSMEPPRPTTDSVNEPSVSNAGDMEAEWIEEDEPGVYITIRQLADGTRELRRVRFRARLPTTCIASPQRQNLDAQATTPKLSTIKRANVIKTHQVYKIINKVANRQSSGYVPPGTRDTNTQSNAKQAHKF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0876 377 ProSiteProfiles BRX domain profile. 273 344 IPR013591 -
Lele52g0876 377 MobiDBLite consensus disorder prediction 10 25 - -
Lele52g0876 377 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 305 IPR044532 -
Lele52g0876 377 MobiDBLite consensus disorder prediction 196 266 - -
Lele52g0876 377 MobiDBLite consensus disorder prediction 250 266 - -
Lele52g0876 377 ProSiteProfiles BRX domain profile. 131 186 IPR013591 -
Lele52g0876 377 MobiDBLite consensus disorder prediction 1 32 - -
Lele52g0876 377 MobiDBLite consensus disorder prediction 199 228 - -
Lele52g0876 377 MobiDBLite consensus disorder prediction 353 377 - -
Lele52g0876 377 Pfam Transcription factor BRX N-terminal domain 26 51 IPR027988 -
Lele52g0876 377 Pfam Transcription factor regulating root and shoot growth via Pin3 131 185 IPR013591 -
Lele52g0876 377 Pfam Transcription factor regulating root and shoot growth via Pin3 272 304 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0876 Lele-ChrLele52 5682937 5688498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0876 1 302 Major Intrinsic Protein MIP AT1G31880 63.665 5.46e-135 388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0862 49 5334313 5338533 Lele52g0876 52 5682937 5688498 hybridization
Lele50g0895 50 5635672 5640609 Lele52g0876 52 5682937 5688498 hybridization