Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0874 ATGGATACTAAACCTAAGTCCGATCAGGTCGTCCTCTTCATCGATCCCCTCAACGCTAGCCCTCCTTCTTCCATGGAAACTCATCACAACAACAATACCGCCATCATCACCACCACCAAGCCCAAACTCACTTCCAGAGTCAAAACCCTCAATCGCCTCAGCTTCTCCAAACCCAAATCTCGCATCCTAGAACAGAACTACCCTCTCTACACCAACTTCATCACTGTCCCCGAAGAAGCCCAAGACCCTTCCCGGTATTCTTCCACCGACGACGAATGGATGACGATGATGAAGAAGATGATGATGATCAGGTCGAGGAGGATGGCCGCCCCAGGCCCTCGTCGCAGCCATAATCTGGCTCGTGAAGATCGTGCCGGTGAAGCTTCTAGCTTCGTCGTTCCACGTGGCAACCTACTTCGACAGAATGAAAGAGAGCGTGTTCCATCACTACATACTGGACACACTCTAGGGGCCACCATGGGAGGAGAACGAGGAAACGATGTCGCAGCATACTCTGATGGGGTCGAAATCCATGCCGGCGAACTGGAAGGGAAGGAGCAAGGCGATGAGGGAGGCGAAGAGCTTGTACAAGTCGAAGAAGTTTGGGTCGAGGAAGATAGATATGGAGAAGCTGAGAGAACTAAGTATGGAGAGCACGGCGTCGGCGTGGAGCGCGAGGAGGCTTGTCAACTACGGAAGAGGGATAATGAGAATATAATGATACGATATTATCCCCAACCCACTTCATTCAGGCACAGTTATATTGAAGAGGAGGATCTCATGAGATTCTTGAAGAGAGTTGAGGTTCATACTATATTCCCACTCTTTGAAGGTGCCCTCGAAACTGGAAAGATCTCCAGGTCTTCATTTAGAAACTGGGTGATTCGAGCATATTATGAAAGAAAGGCTCTGGCACAATCACTGAACGACACGAAAACAGCAGTGCAACAGCTTCACAGATTAGCAAGCTCAATAGTGATAGTGATAATAATTATAGTGCTTCTTTTGGGTACCTGCAAGACTGTGTTGGAGGCCATCATCTTCGTCTTCATCATGCCCCCTTTTGACATTGGAGATCGCTGTGTCATTGATGATGTCCACATGATTGTGGAAGAGATGAATATTTTGACAACTGTGTTTCTTCGATACGACAATGAAAAAATCTACTACCCCAACGCAGTTTTGCCCAACAAGTCAATAACCAATTTCTACAGGAGTACAGAGATGTGGGATTCTGTTGATTTCGTTGTTGATGTTGCAACACCTATGGAGACCATCGTTTCACTCAAGAAAGCAACTCAAACGTACATCGAGAGGAAGCCAAAGTATTGGAATCCAAAGCACGCAGTGATAGCGAAGGAGATAGAGAATGTGGATAAGCTGAAGCTGTGTCTGTGTGTTCAACACACAATAAACCATCAGAACTATGGGGAGAGAAACAATCGGATCACAGAGCTTCTGTTGGAGCTGAAGAAGATCTTTGAGGTTCATGGAGTTAAGTACAATCTTCTCCACGAAGAGGTCCATATTACCAAGATGAACAGTACCCAAAATGGGAGGCCTGTGTTGTAA 1572 0.4663 MDTKPKSDQVVLFIDPLNASPPSSMETHHNNNTAIITTTKPKLTSRVKTLNRLSFSKPKSRILEQNYPLYTNFITVPEEAQDPSRYSSTDDEWMTMMKKMMMIRSRRMAAPGPRRSHNLAREDRAGEASSFVVPRGNLLRQNERERVPSLHTGHTLGATMGGERGNDVAAYSDGVEIHAGELEGKEQGDEGGEELVQVEEVWVEEDRYGEAERTKYGEHGVGVEREEACQLRKRDNENIMIRYYPQPTSFRHSYIEEEDLMRFLKRVEVHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHRLASSIVIVIIIIVLLLGTCKTVLEAIIFVFIMPPFDIGDRCVIDDVHMIVEEMNILTTVFLRYDNEKIYYPNAVLPNKSITNFYRSTEMWDSVDFVVDVATPMETIVSLKKATQTYIERKPKYWNPKHAVIAKEIENVDKLKLCLCVQHTINHQNYGERNNRITELLLELKKIFEVHGVKYNLLHEEVHITKMNSTQNGRPVL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0874 523 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 252 517 IPR016688 -
Lele52g0874 523 Pfam Mechanosensitive ion channel 347 500 IPR006685 GO:0016020|GO:0055085
Lele52g0874 523 SUPERFAMILY Sm-like ribonucleoproteins 345 403 IPR010920 -
Lele52g0874 523 MobiDBLite consensus disorder prediction 108 128 - -
Lele52g0874 523 Gene3D - 354 403 IPR023408 -
Lele52g0874 523 FunFam Predicted mechanosensitive ion channel 354 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0874 Lele-ChrLele52 5663747 5669045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0874 212 514 Mechanosensitive Ion Channel Family AT5G12080 43.902 1.01e-90 291