Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0872 ATGTGTAGAGACGATTTCTCTTGCGAGGACCTGAAGCCTGTGCTTCAACAAGGGATGCTTGCTACTCAGAAGAACGAGTTGGTCCATGCTGAGCGATTGCAGAAGGGCTCTATTGTTAAGCTGACTCAGTTTATCTGTAATGTAGTCCAGAGTCGCAAGATCATCATCATTATCGAGCTGGATATGGTCCTTGACAGATGTGAGATGATTGGAGAACCTGTCCCGGCACCAAGAGCTGGACCTGCATCATCTTCCTCTGGTCAGTCTGAAGCTAGCCCTATTAATCCCCAAATCAATCATACTGCCAATAGTGCAAGGTATGGTGCTGCAAATGACCCTCCTATATTGCTTCAAGAAGAGCCTAGAGCTACACCTACTTTACCTATTCCAAGACCCCCACAAAATGTCTATATTCATCCACCACGGCCTATGCATAGTCAGTCTTCTCCAATTTACAATAAAAGGGGACCGATGGCCAGAAATGAAGCTTTACCAAGGATAATTCCAATAGCTGCATTGAATCCATTCGTAAGCATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCAAGCCTTAGGCAGTACAACAATGCCAGGGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATACAGTGGCTGGACAGTTCTATCATCAAATTGAAATTGGTAAAGTATATATGATTTCCATGGGGAGTATAAAGCCAGCTCAAAAGAATTTTAATCATCTTCCTAATGATCAAGAACTGACCCTTGATGTTACATCCATCATACAGCCATGCAATGATGATGAATCAATTCCAATGCGTATTTTTAATTTTCGCCCTATTAGTGATGTTGAAAGCATCGAAAGTTCGGCTATTGTTGATGTGATTGGTTTGGTATTTTCTATTAGTCCTACAACTTCAATCATGAGAAAGAATGGTACTGAAACTCTGAAGAGAGCCCTCCAGATGAAGGACATATCCGGTTGCAGTGTTGAGTTAACCCTATGGGGAGATTTTTGTAATGCAGAAGGACAACGGTTGCAGAATACGTGTGACTCGGGCACATTCCCCGTGTTGGCTGTGAAAGCTGCCAGGGCTTACAGGTTAAAAGAATGGTTTGACAAGGAAGGGAGGAATGTTCCAGCTATTTCTATTTCCAGAGAATCTTTCAATGTTGGTAAGACTGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCGGAGAAGCCTGATTGGATTAGCATCTGTGGGATAGGAAATGTAGCAAAAAAGTTTCCAATAATGGAGATGGAAAATGGCGGTGTGATAGATGTGACCAGAATGTTGATGCATGTGAATCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTATATGAAATATGAAGAGCAGGATGATGAAAGATTTGCACAAGTCATCCGTAAGGTTCTTTTTACTAAATACATATTCAAGTTAAAAGTTAAGCAAGAGACATTTGGTGGTGAACAGCGTGTGAAGTCAACGGTAGTGAAAGCGGAGAAGGTGGACTTTTCATCTGAATCAAGATTTCTGTTGGATTTGATTGATAAACTTAAAGCTGAGAAGGTTGAAGCTGTGAATCCTAACTCTGTAATCAGTAATGCTGGACCGCAGAATGTTGGAACTGGCCTGGCTGGGCCACCAGCTTTAATCCCATAA 1731 0.4165 MCRDDFSCEDLKPVLQQGMLATQKNELVHAERLQKGSIVKLTQFICNVVQSRKIIIIIELDMVLDRCEMIGEPVPAPRAGPASSSSGQSEASPINPQINHTANSARYGAANDPPILLQEEPRATPTLPIPRPPQNVYIHPPRPMHSQSSPIYNKRGPMARNEALPRIIPIAALNPFVSMWTIKARVTAKASLRQYNNARGDGKVFSFDLLDSDGGEIRATCFNTVAGQFYHQIEIGKVYMISMGSIKPAQKNFNHLPNDQELTLDVTSIIQPCNDDESIPMRIFNFRPISDVESIESSAIVDVIGLVFSISPTTSIMRKNGTETLKRALQMKDISGCSVELTLWGDFCNAEGQRLQNTCDSGTFPVLAVKAARAYRLKEWFDKEGRNVPAISISRESFNVGKTDMRKTISQIKDEKLGTSEKPDWISICGIGNVAKKFPIMEMENGGVIDVTRMLMHVNQECGEEIMGLPAKDLYYMKYEEQDDERFAQVIRKVLFTKYIFKLKVKQETFGGEQRVKSTVVKAEKVDFSSESRFLLDLIDKLKAEKVEAVNPNSVISNAGPQNVGTGLAGPPALIP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0872 576 Pfam OB-fold nucleic acid binding domain 180 269 IPR004365 GO:0003676
Lele52g0872 576 CDD RPA1_DBD_B 300 399 - -
Lele52g0872 576 Pfam Replication protein A OB domain 289 374 IPR031657 -
Lele52g0872 576 Pfam Replication factor-A protein 1, N-terminal domain 15 63 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele52g0872 576 CDD RPA1_DBD_C 409 541 IPR013955 -
Lele52g0872 576 Gene3D - 166 276 IPR012340 -
Lele52g0872 576 Gene3D - 8 76 IPR012340 -
Lele52g0872 576 SUPERFAMILY Nucleic acid-binding proteins 284 386 IPR012340 -
Lele52g0872 576 SUPERFAMILY Nucleic acid-binding proteins 457 542 IPR012340 -
Lele52g0872 576 MobiDBLite consensus disorder prediction 81 99 - -
Lele52g0872 576 FunFam Replication protein A subunit 166 275 - -
Lele52g0872 576 Pfam Replication factor-A C terminal domain 453 535 IPR013955 -
Lele52g0872 576 Gene3D - 278 397 IPR012340 -
Lele52g0872 576 SUPERFAMILY Nucleic acid-binding proteins 10 71 IPR012340 -
Lele52g0872 576 Gene3D - 400 543 IPR012340 -
Lele52g0872 576 PANTHER REPLICATION FACTOR A 1, RFA1 180 520 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele52g0872 576 CDD RPA1_DBD_A 169 271 - -
Lele52g0872 576 SUPERFAMILY Nucleic acid-binding proteins 167 278 IPR012340 -
Lele52g0872 576 MobiDBLite consensus disorder prediction 75 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0872 Lele-ChrLele52 5645099 5647829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0872 15 570 Core DNA Replication Machinery Family AT4G19130 46.285 4.41e-179 523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0872 52 5645099 5647829 Lele52g0872 52 5645099 5647829 ECH
Lele49g0856 49 5295950 5299290 Lele52g0872 52 5645099 5647829 hybridization
Lele50g0890 50 5596328 5597306 Lele52g0872 52 5645099 5647829 hybridization