Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0864 ATGGCCGACGACGGTGCTCCGCTCTTCACCAACAATGTCTCCGTCATACTCATCGCCTTGGGCTCCGCCGCCTTCGTCGTCACAATGTACCATCTAATTGCCGTTTGCCTCTGTGGCAACCAATTGACAGACCCTAACTCTGACCAGGCGCAGCAGCAAGCGTCGAGCATCATTGATGAGAAATCGTTGGCGGAGCTAATTCCGGCACACAAGTACAAGAAGAAGATCGACGACGGCGAGGTGACCTGTGCGGTGTGTTTGGGAGATTTCGAAGAAGGCGAAGAGGTGAGAACATTGCCGGAGTGCTCGCACTCTTTTCACGTTTCTTGCATAGATTTGTGGCTCTTCTCTCATCCGAATTGTCCCGTCTGCCGCGCCGATGCCACGCCCTCTCCGGTGGCTCTAAGCACCGCGACGGAGTCTGTTTCCGGTGAATCGAATTCGAACACGATTGACCACCGGATAGATATTTTGCAAAATGCTTTGGTTCAGAGTGTCATGTTGCGACGGTGA 513 0.5341 MADDGAPLFTNNVSVILIALGSAAFVVTMYHLIAVCLCGNQLTDPNSDQAQQQASSIIDEKSLAELIPAHKYKKKIDDGEVTCAVCLGDFEEGEEVRTLPECSHSFHVSCIDLWLFSHPNCPVCRADATPSPVALSTATESVSGESNSNTIDHRIDILQNALVQSVMLRR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0864 170 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Lele52g0864 170 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 129 IPR044675 -
Lele52g0864 170 SUPERFAMILY RING/U-box 67 131 - -
Lele52g0864 170 CDD RING-H2_PA-TM-RING 82 125 - -
Lele52g0864 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 130 IPR013083 -
Lele52g0864 170 SMART ring_2 83 124 IPR001841 -
Lele52g0864 170 Pfam Ring finger domain 82 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0864 Lele-ChrLele52 5596212 5596724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0864 43 142 C3H Transcription Factor Family AT3G10910 41.346 1.56e-23 89.7