Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0855 ATGAAGCAGCCATCCAATAAGTCGAAGCCATGGAGGCCACTCACCGCAAACTGCTGCTCCACGGAGGACCAAACCAAGCTCGGCAACTTCAGTCGATGCAAGCCGACTTCAAAGTCGGATTTGTCCAAGGACGTTGCTCCGATGCCGTCGTTCCGGAGGCTGTCGTTCGTCTCGGATCTGAGCAGGTCGTCTTCGATTCGAATCAATGAGGATCTGGCGCAGTCGTTCGGGTCGGATCTGCACGATTTTCAGCTGAGCGAGCTGCGAGCCATAACGCAGAATTTCTCGAGCAATTTCTTGTTGGGAGAAGGAGGGTTCGGGACTGTGCACAAGGGCTACATCGATGATAACTTCCGGCAGGGCTTGAAGGCTCAGCCCGTCGCCGTTAAGCTTCTCGACATTGAAGGCTTGCAAGGACATCGGGAATGGCTTGCAGAAGTAGTATTTCTTGGGCAGCTAAGGCACCCAAACTTGGTGAAGTTGATAGGATATTGCTGTGAGGAAGAAGAACGGCTCCTTGTCTACGAGTTCATGCCGAGAGGAAGCTTGGAGAATCACTTGTTCAGAAGGATATCATCACTGCCTTGGGGAACTAGATTGAAAATTGCAATCGGTGCTGCTAAAGGCCTTTCCTTCTTGCATGGCGCAGAGAATCCAGTCATTTACAGGGACTTCAAAACTTCCAATGTCTTGCTTGATTCTGATTTCACAGCAAAGTTGTCAGATTTTGGATTAGCCAAAATGGGGCCAGAGGGATCTAAATCTCACGTCACAACCAGAGTCATGGGTACTTATGGATATGCAGCCCCTGAATACATCTCTACGGGTCACTTAACCACAAAAAGCGATGTTTATAGCTTTGGGGTAGTGCTGCTAGAACTACTCACAGGAAGGAGAGCAATGGAGAAGACAAGGCCAAAGACTGAGCAGAGCCTTGTGGATTGGTCAAGACCGTATTTGAGTAGTTCTAGGAAGATGAGGTATATTATGGATCCAAGGCTTGCAGGGCAGTACTCTGTGAAGGGTTCAAAGGAAATGGCTCGTTTGGCACTGCAATGCATAAGTCTGAATCCTAAAGACAGGCCAAGGATGGCAACCATTGTTGAAACTCTTGAAAACTTGCAGCAGTTCAAGGACATGGCTATTTCCTGTGGACACTGGCCTGCTTCAGTAAAATCTAGAAATGCAGCTTCTGATAAGATCAAAATTGATATCAGAGTTGGGGCAAACCACAGGAAGCCCTCTCCCGTTGTTGCAAGCAAAAAAACTTGA 1272 0.4819 MKQPSNKSKPWRPLTANCCSTEDQTKLGNFSRCKPTSKSDLSKDVAPMPSFRRLSFVSDLSRSSSIRINEDLAQSFGSDLHDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYIDDNFRQGLKAQPVAVKLLDIEGLQGHREWLAEVVFLGQLRHPNLVKLIGYCCEEEERLLVYEFMPRGSLENHLFRRISSLPWGTRLKIAIGAAKGLSFLHGAENPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMEKTRPKTEQSLVDWSRPYLSSSRKMRYIMDPRLAGQYSVKGSKEMARLALQCISLNPKDRPRMATIVETLENLQQFKDMAISCGHWPASVKSRNAASDKIKIDIRVGANHRKPSPVVASKKT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0855 423 PANTHER OS01G0588500 PROTEIN-RELATED 48 375 - -
Lele52g0855 423 ProSitePatterns Protein kinases ATP-binding region signature. 101 130 IPR017441 GO:0005524
Lele52g0855 423 SUPERFAMILY Protein kinase-like (PK-like) 77 372 IPR011009 -
Lele52g0855 423 ProSiteProfiles Protein kinase domain profile. 95 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0855 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Lele52g0855 423 Gene3D Phosphorylase Kinase; domain 1 58 177 - -
Lele52g0855 423 CDD STKc_IRAK 101 374 - -
Lele52g0855 423 FunFam Serine/threonine-protein kinase BIK1 62 177 - -
Lele52g0855 423 Pfam Protein tyrosine and serine/threonine kinase 101 371 IPR001245 GO:0004672|GO:0006468
Lele52g0855 423 FunFam Serine/threonine-protein kinase PBS1 178 384 - -
Lele52g0855 423 Gene3D Transferase(Phosphotransferase) domain 1 178 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0855 Lele-ChrLele52 5531126 5534150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0855 83 413 Glycoside Hydrolase AT3G07070 48.657 1.95e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele52g0855 PK_Tyr_Ser-Thr 3e-48 CL0016