Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0849 ATGGACTGGGCATTTGTGCATAAAACATGGGATAAGTGGGCTTCTACTAGCGTTGGTTCTTCTGATCAACCTTTAAAAGCTGCTTTGCTGATAAATTATGACCCATATGGACCATCACGCCTATTGTCTACCATTGCTGAACAAGAAGGAATTAAAGCCAATCCCATTGAATTGAATCACTTTGTTGACTACGTTAAGCGTAACAAACTCCAGACACAAAGTTTCATTATTGGGCCCAATCAATACTTGGTCACATCAATTCATGAGAATTGGTTTAGTGCTAGGTGCATGAACACATCAAAGCCTGCTGGGGAAGGTGCAATTGTTATGCTGACAGCAGCATATATTTTCGTTGCTCTGTATGAAGGTTCCATTGGTTCAGCATCTCGTGCTATGGCTGCTGCTGATCAGAATCTGGGAAACAAGTCCATTACTAACGTTATTAGAATGAAGAAGTTTCAAGACCCTGCCATCTTGGCCGTAGCAGAGAAAACGCCAGTGTTCCTTGTCTTCTCCATGGGATCCAGTGGTAGTAAAGCCGTTGCTTCTTGCAATGCATCGTCGACGTCGTCGTCTTCGGGAAGTTTTCGTAAGGGTCGATCTAGAGGGCATAGAGGTTTTCAGTCTTATTGTTTAGGAACAACATCTGGATCTCATGATAGTGACAATGACGACCAGGTGTGTGATCAGAATAAAGAAAACGATAGTAATGTTACATACTCCAATGGTGAAGAAACAGATGCAGATGAGATGATATCAGAGTCTTTAAGAAAGATTAAATCTGATAAAATGCCATGTATCCCTCCTAATGTCCGCCTTGATGAGTGGAGTCAAACAAGCATTTCCAATACTGCATCTAGAACTGGTAGCAGTTCTGATCGTCCGGCTTCAACTCAATCTTTGAACCCTTCAAGTCGATTTCTTTCTCGGTTTAGCCTTATTCCTGGTAACGTAAGCTTCAGACTAAGCAGAACCACAAGCTTGGGGTCATCACGGCCTTGCCCTGTTTCTCCTGCAGGTCTCTCAATATTTAACAATGAAGATGACCTTAATCCACAGCCTGGACCTACTGGCAGCTTGGCTAATCAAAATGAAGCTCTACAATGCAGTGACTTGCTTCCTGCATCACATTGCTGTGAAGACACTTCTGTTATTTTAAGGTCTAGTGTCCCTTCATCAGATTCCTATGGCAACTTGCAAAACAATTCAACAGATTCTTCTATGCAGAATCTGATTAGAGATGAAAATGGTGCAAGAGAAGGGTTAAATGTTAACTTATTTTCCCCAATAATTCATGCCAGAACAGAAAATGTTGAGATGAGCCATAATGATCGCCGAAATGGAGCTCGAGAACCTGTGGAACGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGGCTTCGTGATAGGGTTCTTCGTCGATCAACAATATCAGACTTCACCTTTTGCCCACTGCAACAAGAAAGGGATGCCACAGATGCTAGTCAAGATATTGGAAGACAAGCAGGGGAGAGAGAGTCAAGAGTGCTACCACCTGATAGTGACTCTACAAGTTCCCCTTCTACATCTGGATATCTTCCGTCCAATATGTCTAGCTCCTTGTTTGGCATCCAAGACTATGAGGTTGAGTCGTCACGATCAAGAGAAGCTAGGTATCGTGATCTACTGGAAAATAGATCCAATTTTTCCAATTTCCTAGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGAAGCCGATTTGAAAACCTGTCTGGGCATGACAGTTCATGTATTTTATCTGGCCAACATAGAAATGGTCGTTGTACATGCCGACTTAGTAATCGTGATGCCAATTCGAATGATGATACTGGGGCTAGAGCTAGCATATCAAGAATTGTTGTGCTTGCTGAAGCTTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTTTCTTCTATCGGATCTGTTCCTGCACCTTATGAAGTTGTAGAATCCTTGCCTGTCAAATTATACAAAAAGTTGCATAAACATCAAGAGGATGCTGCTCAATGCTATATATGCCTCGTGGAGTATGAGGATGGAGACAGCATGCGAGTGCTGCCATGTCATCATGAATTTCATTTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTATGCCGTGGGGACATCTGCATTGCTGATTCGATACCAACCGAAAACTGA 2247 0.4281 MDWAFVHKTWDKWASTSVGSSDQPLKAALLINYDPYGPSRLLSTIAEQEGIKANPIELNHFVDYVKRNKLQTQSFIIGPNQYLVTSIHENWFSARCMNTSKPAGEGAIVMLTAAYIFVALYEGSIGSASRAMAAADQNLGNKSITNVIRMKKFQDPAILAVAEKTPVFLVFSMGSSGSKAVASCNASSTSSSSGSFRKGRSRGHRGFQSYCLGTTSGSHDSDNDDQVCDQNKENDSNVTYSNGEETDADEMISESLRKIKSDKMPCIPPNVRLDEWSQTSISNTASRTGSSSDRPASTQSLNPSSRFLSRFSLIPGNVSFRLSRTTSLGSSRPCPVSPAGLSIFNNEDDLNPQPGPTGSLANQNEALQCSDLLPASHCCEDTSVILRSSVPSSDSYGNLQNNSTDSSMQNLIRDENGAREGLNVNLFSPIIHARTENVEMSHNDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTISDFTFCPLQQERDATDASQDIGRQAGERESRVLPPDSDSTSSPSTSGYLPSNMSSSLFGIQDYEVESSRSREARYRDLLENRSNFSNFLERRRRIRSQVRALQRLGSRFENLSGHDSSCILSGQHRNGRCTCRLSNRDANSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYKKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHLTCIDKWLKEIHRVCPLCRGDICIADSIPTEN 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0849 748 MobiDBLite consensus disorder prediction 184 303 - -
Lele52g0849 748 MobiDBLite consensus disorder prediction 344 359 - -
Lele52g0849 748 Gene3D Dynein light chain 2a, cytoplasmic 9 142 - -
Lele52g0849 748 SUPERFAMILY RING/U-box 671 741 - -
Lele52g0849 748 MobiDBLite consensus disorder prediction 489 531 - -
Lele52g0849 748 MobiDBLite consensus disorder prediction 494 512 - -
Lele52g0849 748 CDD mRING-H2-C3H2C2D_ZSWM2 692 735 - -
Lele52g0849 748 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 173 747 - -
Lele52g0849 748 MobiDBLite consensus disorder prediction 273 303 - -
Lele52g0849 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 739 IPR013083 -
Lele52g0849 748 SMART ring_2 693 734 IPR001841 -
Lele52g0849 748 MobiDBLite consensus disorder prediction 232 246 - -
Lele52g0849 748 MobiDBLite consensus disorder prediction 513 531 - -
Lele52g0849 748 ProSiteProfiles Zinc finger RING-type profile. 693 735 IPR001841 -
Lele52g0849 748 FunFam Putative RING zinc finger domain superfamily protein 662 740 - -
Lele52g0849 748 Pfam Ring finger domain 692 735 IPR001841 -
Lele52g0849 748 Pfam Profilin 9 133 IPR005455 GO:0003779
Lele52g0849 748 MobiDBLite consensus disorder prediction 339 359 - -
Lele52g0849 748 SUPERFAMILY Profilin (actin-binding protein) 10 127 IPR036140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0849 Lele-ChrLele52 5482027 5492354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0849 408 742 C3H Transcription Factor Family AT5G45290 57.925 2.60e-110 344