Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0841 ATGAACCCGCTTTTTTCTTCGTTAAAAGAGCAAATGACGATTCTTGTTCTTTGGTTGTACCCAAACCTGCAGATTCTTCTTCACCCATTGAAGCAACCCTCCCACCAAACCCTAACGCTACAATCTAAACCTTCCAGTTCGAACATTTCTCTTCTTCTTCTTTTCCTACGTTTTTTTTGCTGGTTCCCGCCCTTTCCTTCATCGCCCACTTGGCTGGAATTTCTATTTTCTCAAACAGACGTTCATCTCATTCACTTCATGGCGAGTGATTCTGGCACAAAACCTTCCCCTGCTTCTTCGTCTTCTTCAACTGCAGGGGAATCTTACATTGGGAGCTTTATCAGTCTGATTTCCAAGTACGAGATTCGTTACGAAGGCGTTTTGTATCACCTCGACGTCCAGGATTCCACCATTGGCTTGACGAGCGTTAGATCTTATGGGACAGAGGGGAGAAGAATAGATGGTCCACAGGTTCCTCCAAGTGACAAGGTTTATGAATACATTATTTTTCGAGGAAGTGACATTAAGGATTTGCAGGTCAAGTCCCCCTCTACATCTATCAAAGAAGAGCAGGTATTCAGTGATCCAGCTATTATCCAGTCACAATATTCTGAAGTTCCTTCAAGTTCTCCTATGGCTTCAGTGGGTGGGAGAAGTTTGACAGAATCAATTCAATGGCAAGATACTCCTGCTATGGCCCATAGAGACATTCCTCTTCCTGCTGGGTTGCCTTCTCATCAACCTGCAACATTGATGGGCCCATCTGGTCAATCTGCTGTTACTCATGTTTCTGCTGCTCCTTCTTTCTCCACAACAGTGTATTGGCCAGAGTATAGTGGGATATCAGGAAGTAGCTCTGATTCTATGCTGCAGTCTGGTCCTTTTCAGTCCCCTTCAGGAGTGGCACCTTTAAATACACAGAGCTGGGTCCAAACTCCAGAAAGTCAATTACGTTCTTCAAAAGTGGGCTGGACTACTTTACCAGAGCATGGTGAACCTGTCTCATCTGTTACCGCTTCATCTCTTGTAAATCCGTCTTACAAACCTTCATCTTCCTCTTTACAAACTTCTGATTCTCTAGATTCTCCATCTCTTTTCTCTTCTAAGACATCATTCCCCTATCATTCTTCTGTGGCTGAGTCGAACATGCCTTCATTTTCTTCACCATTTCAAGGCATAAATTCTGTCAAAGATCAATTTCCTGGAAAAATTTCTCCTTATATGGGATCAATGTTTCCTGGACAATCTGCCCATCATTCTGTTTCTTCATCAGTTGATTCTACTTCAGGCTCCTTGCTTAGACCTCCATCCTTTTTTACTCCAGATCAGTTTGCTCATTCTGGACAGAATTTTGTTTCTTTAGTACAGAACCAGATCCCTGATCAGAATCATATGGTTTCTCTGGCACAACAATCCCCTAGCTCCTCATTTTTATTACCTTCTCCAGAATTTCAAGCACCATTGTTGCCTTCACCACCATTGTCAACTTCAGTGCACAAGCCTCAGTACTCAGCCTCACAGTTCAGTGAAGAGTTTGATTTTGAGGCCATGAACGAAAAGTTCAAGAAGGATTCAGTATGGGGCTCTCTTGGGAGGGCATCTAAGACAATAGAAGGAATGGAGGGTAATGCTCCAACTGACAGCTTGGTTGACAGAGAGTGTCGTGGCTTTCAACCTAACCTAAACCCCCAGCCTGCATATAGGAAAGACGACTTTTTTGACACAATTTCATGTAACTCTCTCTCTCGAGGATCAAGGAATGGACAGAATCGCCTATCTGAGAGAATGAAGCTGGATTCTGAGACGTTCGGCAATTTTTATCGGAGCCCTGCTATGGGTTATGGTAGCTATGGTAGTGGACGCGGTGAATATTACAAGAACTCATACAATATGGGAAGGGGTTATAGCTATTATGGTGGAAGAGGGCGTGGCAGGAATATGCCTTTCTATTAG 1953 0.4357 MNPLFSSLKEQMTILVLWLYPNLQILLHPLKQPSHQTLTLQSKPSSSNISLLLLFLRFFCWFPPFPSSPTWLEFLFSQTDVHLIHFMASDSGTKPSPASSSSSTAGESYIGSFISLISKYEIRYEGVLYHLDVQDSTIGLTSVRSYGTEGRRIDGPQVPPSDKVYEYIIFRGSDIKDLQVKSPSTSIKEEQVFSDPAIIQSQYSEVPSSSPMASVGGRSLTESIQWQDTPAMAHRDIPLPAGLPSHQPATLMGPSGQSAVTHVSAAPSFSTTVYWPEYSGISGSSSDSMLQSGPFQSPSGVAPLNTQSWVQTPESQLRSSKVGWTTLPEHGEPVSSVTASSLVNPSYKPSSSSLQTSDSLDSPSLFSSKTSFPYHSSVAESNMPSFSSPFQGINSVKDQFPGKISPYMGSMFPGQSAHHSVSSSVDSTSGSLLRPPSFFTPDQFAHSGQNFVSLVQNQIPDQNHMVSLAQQSPSSSFLLPSPEFQAPLLPSPPLSTSVHKPQYSASQFSEEFDFEAMNEKFKKDSVWGSLGRASKTIEGMEGNAPTDSLVDRECRGFQPNLNPQPAYRKDDFFDTISCNSLSRGSRNGQNRLSERMKLDSETFGNFYRSPAMGYGSYGSGRGEYYKNSYNMGRGYSYYGGRGRGRNMPFY 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0841 650 Pfam FDF domain 507 605 IPR019050 -
Lele52g0841 650 ProSiteProfiles FFD box profile. 565 580 IPR025761 -
Lele52g0841 650 SMART LSM14_2 103 203 IPR025609 -
Lele52g0841 650 MobiDBLite consensus disorder prediction 331 360 - -
Lele52g0841 650 SMART FDF_2 506 607 IPR019050 -
Lele52g0841 650 SUPERFAMILY Sm-like ribonucleoproteins 108 183 IPR010920 -
Lele52g0841 650 MobiDBLite consensus disorder prediction 325 360 - -
Lele52g0841 650 Pfam Scd6-like Sm domain 109 182 IPR025609 -
Lele52g0841 650 MobiDBLite consensus disorder prediction 285 305 - -
Lele52g0841 650 ProSiteProfiles DFDF domain profile. 500 536 IPR025762 -
Lele52g0841 650 PANTHER SCD6 PROTEIN-RELATED 103 646 - -
Lele52g0841 650 CDD LSm14_N 106 180 IPR025609 -
Lele52g0841 650 Gene3D - 100 185 - -
Lele52g0841 650 ProSiteProfiles TFG box profile. 587 607 IPR025768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0841 Lele-ChrLele52 5398636 5403419 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0841 52 5398636 5403419 Lele52g0841 52 5398636 5403419 ECH
Lele49g0817 49 5013989 5018169 Lele52g0841 52 5398636 5403419 hybridization
Lele50g0854 50 5336847 5343579 Lele52g0841 52 5398636 5403419 hybridization