Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0828 ATGAAAGGGCGCTCGCACCGCCTGCAGAGTTCGGACCCTCCCGACGACTGGATTGATGGTTCTTGGACTGTGGATTGCGTATGCGGTGTGAATTTTGACGATGGGGAGGAGATGGTGAATTGTGACGAGTGCGGTGTGTGGGTGCACACGCGTTGCTCGCGATATGTTAAAGGAGATGATATGTTTGTATGCGATAAGTGCAAGATCAAGATTAATCGATCTGATGCGGAGGAAACGGAGGTGGCCCAGTTGTTAGCTGAGCTCCCTACGAAGACCGTGAGAATGGAGAATTCATTTGCACCCATCGGAGCTCCTCGGCGTCTCAAGCTTTGGACTGACATGCCTATGGAGGAGAGGGTGCACATTCAAGGAATTCCTGGTGGCGATCCTTCTCTTTTTGGTGGGATATCCTCTATTTATAATCGGCAGCTATGGAAATGCACTGGATATGTTCCCAAACATTTTAATTTTCAATATAGGGAATTTCCCTGCTGGGATGAGAATTCCACTAGGGAGGAGGATAATGAGAATCCTATTAATAAAGGGGCTGGAGTACTATTTTCCTTATCAAAAGAGAGTATATCGGCCACCCCTATTGCAACTTTAGTTGACATGAGAGCTAGGGAGGGAGAAGATGGTTCTGACCTGAAGAAGTCTCTGAAAGAGACGAAAAAGAGTGACAGTGAAGATGCGGAAGCTATAAGGCGTGCCCAGAATGGCATGAAGAAGGAAAGGAGTTTGCTTCGGTCTGTTGTGCATTCAGGTAAGCAGAAAAAAGTAGAGTTGGGAACATCCAAAGATCGCAGTGGGAAGAAGAGTATTAAAACTTCGGACAAAGAGGTAGATCCCAAGAGGAGATCTTCACATACTTCGAAAACAGCATTTACACCCACCAGTGATGCAAAACCATTGGAATTTTATGAAGACAGAGGGCTGAAGAATTTCAAGACTGATACCTGGAGCGTAGAGAATAAAACTTTGAAAGACATTGTGGTTCAGGAACACGTTTCAAATAATTACTCTGCTGTGGATACCATTATGAAGGAGCCAAATATCAACTCGGCAACTACTGAGGATTCTTCAGAAGCCTTGTATCCTGACACGACAAGGCATAGTTTTTCAGTTGGACCAGAAATAGCAGAAGAGAAAACTGAAAAAGCTCCTTCTGTTTCTGAAATTTCTTCCAAGACTGATGATAACATTTCATCATATTTAAAGAATAATTCTGCTGGAAATGCTTCAATTAAAGAACAGGAGGGAGATGGCCTGGCGGTTAATAATGCAGATGACAGTATAGTAGTAAGAAGCACAATAAGTCCCGCAGAAGAAGATCTTTGTGGTCCTGCACCAGAACCCAGGGATAACCACGATTCCCAAGATTTTGACTATGAAACGTGTCCTAGCTCTGGACAGAGCAATCTTAAGGTGAAGAGAGAAGGGGATAATGATAATTTTGGGAAGCATTTGATTTCTCATTCTTCTAGCATGGGTGATCTGAAAAGTGATGAGAAACTGCCTAAACGCAAATCTGATCATGTTAATGATAGTGTGGTGACCAATTCATCCTATGAAAATAAGGTGGAAGACAGTGAAAGAAAATCAGAAGTAGTCGTTGATTGCCATACCAATAATTCTGAGGAATTATCATGTCATTTTTATCCTGTAAAACAAGAAATGGCAGGGTCTGAAGGTCCCATGGAAAGCCAGAAGGGGTTTTCAGAAATAGAAAATGGTTCTGGCTATGCTGAAGATCCATCAAAATCTGAAACTGCATTCTGTCCTCATAAAATGTTATCATGTGTTGGGAAGTCATCCTTAAGTTCCTCAACTATGAATTCCAAAATTCCTGCTAGTGACAAAAAATCTGAAGAGACTGAAATTCCTAATCCTCTTGTCAAGCATGGAGTAACGACAGATTGCAACGTTTACAATAAGAAAGAAAGTAATCAAAATGATATTGTGAGGGATGAAGTTCCTAGGAAGTCTCAAAAAGAACGTCTGAAATCATCTTCAAATTCTAATTTGAAAGCAACGCATTCAAGCAAAAGCGCACAAAATACTGTCTTAAGGCAAGTCAGTGCAGATTCAAAAGATTTTGTTAGTAGTTCATCTTCTAAAGCATCTTTGGTTCATCCAACTGGAACTAATTTGGGCTTGAGCGAGTCTGATGAATCATTACTGCACCAAAAGTCTTTACAAGCGCCAAATAAGATGTCGTCTTGGGTACCACAGAGAGTTGAAAAGGTTAATCAGACGAACTCCCAACCTTCCTCTAAGGTGAACCAGAATCACGTGCCATCACCTTCGCCAACATCTAATTCTTCTGCAATGCTAAGTGATGAGGAGCTTGCACTACTATTGCATCAAGAACTAAATAGTTCTCCCCGAGTTCCTCGGGTACCCCGAGCACGTCATGGGGGTAGCTTGCCACATCTAACTTCTCCTAGTGGTGCAAGCATGCTATCAAAGCGCACATCGTCTGCTGGAGGAAAAGATTATTGCTTGTTCTCTCGGCGAAAATACAAGGATGCATCTAGAGATGGGCCTTGCAGTTCCCGTGAGCTTGAAGATGAAGCTAAAAGGATAGAGAATGCATCATCTTCCTTTGATCAGAAGAAAAAAGATATGGAATGTGTGGAAGATGCTTCTGCAATGGAAGAAGGCCACATATCTATGACAACCATAAATTCTACAACAAAGTATGTTGCTCCTGCCGCTGCTGCCACTGCAAATAGTAGTTCAGCCTCCCCTCCTGAGGATCGAAACTTGCCGTTCATACGCAACTCACAAAAAAATATATCTGACGATGATAATGGAACTGCTGGAAGGCCAGCCCATTGCACTTTGCCTGGCTTGATCAATGAGATTATGAGCAAAGGTCATCGGATAACATACGAGGAACTCTGTAATGCTGTGCTGCCGCACTGGAATAACTTGAGGAAGCATAACGGAGACCGCTATGCTTACACAAGTCACTCTCAAGCTGTTCTTGATTGTTTGAGGAATCGGCATGAGTGGGCAAGGTTGGTTGACCGTGGTCCAAAGACAAATTCTACTAGGAAAAGGCGAAAGTTTGATGAAGAATCTGATGATAATGTAACTGGCAAGGGCAGAACTTCAAAAGGTGGTGAAGGGAAGAATTTTGAGTTGCGGAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCACGGAAGCGCAGGCGTCTCGCTCTTCAGGGGATAGCAGTCAAGGATGCTCGGAGAAGAAATGCTGATTCACTAACTGATGAAGATGTTGGTCCGTTCTCCAATTCCAGTGAGGAGAGCGAGTTTAGCGAGGATGAAATTCATGGTGGCAGAACAGGTCAAGTGGGAAGTGAAGCTTCTGCTAGTTCAGACGAGGAAGGTAGCGCCTAA 3393 0.4321 MKGRSHRLQSSDPPDDWIDGSWTVDCVCGVNFDDGEEMVNCDECGVWVHTRCSRYVKGDDMFVCDKCKIKINRSDAEETEVAQLLAELPTKTVRMENSFAPIGAPRRLKLWTDMPMEERVHIQGIPGGDPSLFGGISSIYNRQLWKCTGYVPKHFNFQYREFPCWDENSTREEDNENPINKGAGVLFSLSKESISATPIATLVDMRAREGEDGSDLKKSLKETKKSDSEDAEAIRRAQNGMKKERSLLRSVVHSGKQKKVELGTSKDRSGKKSIKTSDKEVDPKRRSSHTSKTAFTPTSDAKPLEFYEDRGLKNFKTDTWSVENKTLKDIVVQEHVSNNYSAVDTIMKEPNINSATTEDSSEALYPDTTRHSFSVGPEIAEEKTEKAPSVSEISSKTDDNISSYLKNNSAGNASIKEQEGDGLAVNNADDSIVVRSTISPAEEDLCGPAPEPRDNHDSQDFDYETCPSSGQSNLKVKREGDNDNFGKHLISHSSSMGDLKSDEKLPKRKSDHVNDSVVTNSSYENKVEDSERKSEVVVDCHTNNSEELSCHFYPVKQEMAGSEGPMESQKGFSEIENGSGYAEDPSKSETAFCPHKMLSCVGKSSLSSSTMNSKIPASDKKSEETEIPNPLVKHGVTTDCNVYNKKESNQNDIVRDEVPRKSQKERLKSSSNSNLKATHSSKSAQNTVLRQVSADSKDFVSSSSSKASLVHPTGTNLGLSESDESLLHQKSLQAPNKMSSWVPQRVEKVNQTNSQPSSKVNQNHVPSPSPTSNSSAMLSDEELALLLHQELNSSPRVPRVPRARHGGSLPHLTSPSGASMLSKRTSSAGGKDYCLFSRRKYKDASRDGPCSSRELEDEAKRIENASSSFDQKKKDMECVEDASAMEEGHISMTTINSTTKYVAPAAAATANSSSASPPEDRNLPFIRNSQKNISDDDNGTAGRPAHCTLPGLINEIMSKGHRITYEELCNAVLPHWNNLRKHNGDRYAYTSHSQAVLDCLRNRHEWARLVDRGPKTNSTRKRRKFDEESDDNVTGKGRTSKGGEGKNFELRKEEFPKGKRKARKRRRLALQGIAVKDARRRNADSLTDEDVGPFSNSSEESEFSEDEIHGGRTGQVGSEASASSDEEGSA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0828 1130 SUPERFAMILY FYVE/PHD zinc finger 14 71 IPR011011 -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 440 533 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 390 413 - -
Lele52g0828 1130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 74 IPR013083 -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 559 588 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 208 298 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 602 616 - -
Lele52g0828 1130 SMART PHD_3 25 68 IPR001965 -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 792 825 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 447 461 - -
Lele52g0828 1130 PANTHER UNCHARACTERIZED 1 1121 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 668 779 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 1011 1130 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 602 779 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 649 667 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 1116 1130 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 208 289 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 1011 1056 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 377 413 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 1070 1087 - -
Lele52g0828 1130 MobiDBLite consensus disorder prediction 497 514 - -
Lele52g0828 1130 Coils Coil 852 872 - -
Lele52g0828 1130 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0828 Lele-ChrLele52 5255617 5260477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0828 24 67 PHD Transcription Factor Family AT5G22260 42.553 6.94e-06 48.5