Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0801 ATGACAGAAGTAGCGAGCTCAGTTGTGCACGAGGTGCTGGGACGACGGCTCGAAGATGTGGATCAGCCGATTATTGATTATATTATCAACGTCCTCGCAGATGATGACTTTGATTTTGGAGATGATGGAGAAGGCGTCTTCGATTTTCTCGGGGAGCTACTCGTTAGTGCCGGCTGTGTCGACGACATATCTGAGTGTCGCACTGTATGTAGCAAATTGTCTGAAAAATTTGGAAAGCATGGGTTGGCCAAGGCCAAACCGACCGTGCGAAGCCTTGCAGCACCCGTCAGAATGGATGACGGAATGGATGATGGGGTAGCTCCTAAGAAGAAGCGTGAGCCTACCGATGGTCCTTTGCTAACTGAACGTGACCGTGTAAAGCTAGAAAGAAGAAAGAGGAAGGATGAACGCCAAAGGGAGGCACAGTACCAAATGCATCTAGCAGAAATGGAAGCAGCCCGAGAAGGGATGCCTGTTGTATGTGTTAGGCATGATAATAGTGGTGGAGCAGCTGTCAAGGACATTCACATGGAGAACTTCAATATTTCTGTTGGTGGCCGTGATCTCATTGAGGATGGTTCAATCACACTTTCATTTGGAAGGCATTATGGTCTTATTGGAAGAAATGGTACTGGGAAAACAACATTCCTCAGGCATATGGCTTTGCATGCTATTGATGGTATACCAATTAATTGTCAGATATTGCATGTGGAACAAGAGGTAGTTGGTGACAATACAACAGCCTTGCAGTGTGTTCTCAATTCGGATATTGAGAGAACTCAACTTCTGGAGGAAGAAGCTCGATTACTTGCCCAACAGAGAGAGTTGGAGTCTGGGGATGTAACTGTAAAGGGCAATGATGCCATTTCACAGAGACTTGAGGAAATCTACAAGAGGCTTGATTTTATTGATGCTTACTCTGCAGAGTCACGTGCAGCTTCAATACTTGCAGGCCTAAGCTTCTCTCCTGAGATGCAAAAGAGGGCAACAAAAACTTTCTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGAGCACTATTTATAGAACCTGACTTGTTGCTTCTTGATGAACCTACGAACCATCTTGATCTTCATGCTGTCTTATGGCTGGAATCTTACTTGGTTAAGTGGCCAAAAACGTTCATAGTTGTTTCTCATGCTAGAGAATTTTTGAACACGGTGGTGACTGACATAATTCATCTACAAGCTAAAAAGTTGACTACTTATAAAGGGGATTACGATACTTTTGAGAAGATTCGAGAAGAACAGCTTAAAAACCAGCAAAAAGCAGTGGAGGCAAATGAACGTGCAAGGGCTCATATGCAGTCTTTCATTGACAAGTTCCGTTATAATGCCAAGAGGGCATCGCTTGTTCAATCAAGAATTAAGGCTTTGGACCGGATGGGTCGTGTGGATGAAATTATCAATGATCCTGACTACAAGTTTGAGTTCCCAACTCCAGATGATAGACCTGGTGCACCAATAATAAGTTTCAGTGATGCATCGTTTGGTTACCCTGGGGGCCCAATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCCAATGGTATTGGCAAATCTACCATACTTAAGTTAATTGCAGGGGAACTACAACCCATTTCTGGGACAGTTTTTCGTTCTGCCAAGGTTCGTATAGCAGTCTTCAGTCAGCATCACGTTGATGGACTAGACTTATCTTCGAATCCCCTTTTGTATATGATGCGCTGCTATCCTGGTGTTCCTGAACAGAAGCTTCGAGCTCACTTGGGCTCTTTTGGTGTAACTGGAAATCTTGCACTTCAACCGATGTATACACTGTCAGGGGGACAAAAAAGCAGGGTTGCATTTGCGAAGATAACTTTCAAGAAACCACACATAATATTGCTTGATGAACCTTCCAATCACCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTTGTAATGTTCCAAGGAGGCATTCTAATGGTGAGTCATGATGAGCACCTAATATCTGGAAGCGTGGAGGAGCTATGGGTTGTATCCGAAGGAAGAGTGAGCCCATTCCACGGCACCTTCCAAGATTATAAGAAGATACTCCAGTCATCATAG 2124 0.4421 MTEVASSVVHEVLGRRLEDVDQPIIDYIINVLADDDFDFGDDGEGVFDFLGELLVSAGCVDDISECRTVCSKLSEKFGKHGLAKAKPTVRSLAAPVRMDDGMDDGVAPKKKREPTDGPLLTERDRVKLERRKRKDERQREAQYQMHLAEMEAAREGMPVVCVRHDNSGGAAVKDIHMENFNISVGGRDLIEDGSITLSFGRHYGLIGRNGTGKTTFLRHMALHAIDGIPINCQILHVEQEVVGDNTTALQCVLNSDIERTQLLEEEARLLAQQRELESGDVTVKGNDAISQRLEEIYKRLDFIDAYSAESRAASILAGLSFSPEMQKRATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQAKKLTTYKGDYDTFEKIREEQLKNQQKAVEANERARAHMQSFIDKFRYNAKRASLVQSRIKALDRMGRVDEIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPISGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSEGRVSPFHGTFQDYKKILQSS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0801 707 CDD ABCF_EF-3 497 689 - -
Lele52g0801 707 Pfam ABC transporter 514 644 IPR003439 GO:0005524
Lele52g0801 707 MobiDBLite consensus disorder prediction 102 119 - -
Lele52g0801 707 Pfam ABC transporter 400 480 IPR032781 -
Lele52g0801 707 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 156 706 - -
Lele52g0801 707 Gene3D - 168 460 IPR027417 -
Lele52g0801 707 SMART AAA_5 199 406 IPR003593 -
Lele52g0801 707 SMART AAA_5 522 689 IPR003593 -
Lele52g0801 707 FunFam ABC transporter F family member 3 127 442 - -
Lele52g0801 707 ProSitePatterns ABC transporters family signature. 616 630 IPR017871 GO:0005524|GO:0016887
Lele52g0801 707 Gene3D - 461 707 IPR027417 -
Lele52g0801 707 Pfam ABC transporter 193 361 IPR003439 GO:0005524
Lele52g0801 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 497 706 IPR003439 GO:0005524
Lele52g0801 707 FunFam ATP-binding cassette sub-family F member 3 459 707 - -
Lele52g0801 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 698 IPR027417 -
Lele52g0801 707 CDD ABCF_EF-3 175 406 - -
Lele52g0801 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 412 IPR027417 -
Lele52g0801 707 ProSitePatterns ABC transporters family signature. 333 347 IPR017871 GO:0005524|GO:0016887
Lele52g0801 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 429 IPR003439 GO:0005524
Lele52g0801 707 MobiDBLite consensus disorder prediction 98 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0801 Lele-ChrLele52 5074556 5082657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0801 459 658 Calmodulin-binding Proteins AT2G36910 26.293 7.13e-10 60.8