Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0790 ATGTCTTTGGTTGAAGGTGGTTGTGGAGGGGATGATCTGTATGAAGAACTATGGAAGGCCTGTGCAGGACCTCTTGTCGACGTTCCTCGGGCCGGCGAGAGGGTGTTCTATTTTCCACAAGGACATATGGAGCAATTGGAGGCATCAACAAATCAAGAACTTAATCATAGGATTCCGGTGTTCAACCTTCCATCAAAGATCCTTTGTCGCGTGGTGAACGTCCATCTACTGGCTGAACAAGAAACTGACGAGGTTTACGCCCAAATTACGCTGGTACCAGAATCCAATCAAGATGAGCCTACTAGCCCAGATCCAAGCCCTGCTGAACTTCCAAGGCCAGCAGTTCATTCATTCTGCAAGGTTTTGACGGCATCTGATACAAGCACCCATGGTGGATTCTCTGTTCTCAGAAAACACGCCACTGCATGCCTTCCTTCTCTGGACATGTCCCAACCAACTCCTACTCAGGAATTGGTTGCCAAAGATCTTCACGGTTACGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTCGACATTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCAAAGAGATTAGTTGCTGGAGATACCTTCGTGTTTTTAAGAGGGGTCAATGGAGAATTACGTGTTGGAGTTAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCAACATCCGTAATTTCCAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACCCAAACTCTTTTTGTTGTATACTATAAACCAAGGACAAGTCAATTCATCATAAGCGTAAACAAGTATTTGGAAGCTATTGACAATAAGTTCACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAATTGATAAGAGATTTTCGGGCACTATTATTGGGGAGGAAGATATTTCTCCTCACTGGGTAAATTCGAGCTGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCAGCTGTTCCAAGACCAGATAAGGTTTCACCATGGGAAGTGGAACCTTTTCTTGCTCCCGGCATTTCATCTTCGGTTCAACCTCCCGTTGTAAAGACTAAGAGACCTCGACCACCCAGTGAAATTCCAGATCTTGATACAACTTCCACTGCCTCTGCTTTCTGGAATTCTGAGCTGATGCAATCCGATATTACCCAACTCGGAGTTATGGCCGAAAACAATTGGAGTGACAATTCTGGCATGTGGCATAACAGTCAAGGTGAAATGAATAGTAAAAGTAGCAGCAACACTCTTTCAAGGAATCAAACAGAAGGGAGTTGGCTATCTTCTCCCCACTCAACCGGTCCTCCGCAACTGTTGCAGGACACCACAGATGATGGCAAGAGCGTCTCTGCTTGGCCTGTTCACTCAGTCCATTCAACACCTCACTCATCGCGACTGAACAATGATCATGTGCTTGAACAAGCTGGCAAGGAGAATAAAGTTGAGATTGCTACAAGCTGTCGATTGTTTGGGATTGAACTTATCCATCCCCAAAATTCAACTACTATGTTGAAGACACCTGCACATGCAGCTGGTATGCTTACTGGCCCATCTGAAAGTCATGTCAACGCCTTGCCTGGAACTGATTCAGATCGTAAGTATAACATGTCAAAGGCTTCCTATGAGGGGAAACAAGAACATCTGCAAGTAAAGGAGACTCAGAGCAAGCAAATATGCTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGCGGTGGGTCGTGCTGTTGACTTGGCCATGTTGGATGGTTATGATCAACTTATCGTTGAGTTGGAGGAGATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGGGATGATCCATGGCCTGAATTCTGTAATATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTACGGGAAGCAAATTGCCTATTTCATCAATGGAAGGTGATGGGACTGTAATAAGTGGGAGCACAGCTGAAACCTGA 2058 0.4553 MSLVEGGCGGDDLYEELWKACAGPLVDVPRAGERVFYFPQGHMEQLEASTNQELNHRIPVFNLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPSPAELPRPAVHSFCKVLTASDTSTHGGFSVLRKHATACLPSLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGVNGELRVGVRRHARQQSSMPTSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAIDNKFTVGMRFKMRFEGDESPEIDKRFSGTIIGEEDISPHWVNSSWRSLKVQWDEPAAVPRPDKVSPWEVEPFLAPGISSSVQPPVVKTKRPRPPSEIPDLDTTSTASAFWNSELMQSDITQLGVMAENNWSDNSGMWHNSQGEMNSKSSSNTLSRNQTEGSWLSSPHSTGPPQLLQDTTDDGKSVSAWPVHSVHSTPHSSRLNNDHVLEQAGKENKVEIATSCRLFGIELIHPQNSTTMLKTPAHAAGMLTGPSESHVNALPGTDSDRKYNMSKASYEGKQEHLQVKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLDGYDQLIVELEEMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSTGSKLPISSMEGDGTVISGSTAET 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0790 685 Gene3D - 279 351 - -
Lele52g0790 685 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Lele52g0790 685 ProSiteProfiles PB1 domain profile. 573 654 IPR000270 GO:0005515
Lele52g0790 685 MobiDBLite consensus disorder prediction 409 478 - -
Lele52g0790 685 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele52g0790 685 SUPERFAMILY DNA-binding pseudobarrel domain 109 247 IPR015300 -
Lele52g0790 685 Pfam Auxin response factor 244 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele52g0790 685 CDD B3_DNA 116 218 IPR003340 GO:0003677
Lele52g0790 685 Pfam AUX/IAA family 616 657 IPR033389 -
Lele52g0790 685 Pfam AUX/IAA family 531 609 IPR033389 -
Lele52g0790 685 FunFam Auxin response factor 116 220 - -
Lele52g0790 685 SUPERFAMILY CAD & PB1 domains 574 649 - -
Lele52g0790 685 Gene3D - 569 661 - -
Lele52g0790 685 SMART B3_2 118 220 IPR003340 GO:0003677
Lele52g0790 685 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Lele52g0790 685 MobiDBLite consensus disorder prediction 357 378 - -
Lele52g0790 685 Gene3D - 115 220 IPR015300 -
Lele52g0790 685 FunFam Auxin response factor 279 351 - -
Lele52g0790 685 FunFam Auxin response factor 568 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0790 Lele-ChrLele52 5005057 5008610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0790 9 666 B3 DNA Binding Superfamily AT4G23980 59.281 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele52g0790 AUX_IAA 2e-08 CL0072