Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0771 ATGGCTCATTCCTCCTGCTTCGTCTTCTTCCTCTCCCTCTTCCTTATTTATGCCACAACAACAAGCATTAATACCTGCGAGACATATACATATTGCGACATTAACGAAATTCCCATTCGGTTCCCTTTCCAATTGGTCAGAGACGAAGCGAATAATCGAAGCGACGGTAATCGTTGTGGGTACCCTGGTTTTGAACTTTCCTGCAACAAAAGCAGAACGATAATTCATCTCCCACACTCTGGAAACTTCCTGGTGGATTCAATATCCTATGAAGAACAAAAGCTTTGGATCAGAGACCCCGACGGTTGCTTCCCCAAACGGTTCATGAACAAAAACTTCAACCTCACAGATTCCAACTTCCAGCTCAGCGATGATTATATGTTCATGGATTTCACCTTTTTCAACTGCTCCTCCAACGTCACCCAGCAGTTCCCACTACCACCCGTCCCTTGCTTAAGCTCCGACCTCGACCGGAACTATTCGGTGGTCGCTGTCTTCTCGGATCCTAACTTTTCTACGCCATGGGCCGCAAGGTGTGAACCTATTTCCTCTGCTTCACTTCCTTATTCTATCACCGATCGACCATTCTGGATGGACCTGAACGCTGATATAGGCTTGCAATGGAACACGCCAAGCTGTGGAAACTGTGTCGCAAGGAACGGACGATGCGAGTTCTTGAGGGACACAGGCCTTGAAATCGCCTGCTATTTACCACACCATGGGGGTCTTTCAAAGTTTGCCAAGTATGGATTAAGCTTTGGCGTGGGGATACCTGGATTGCTCTGTGTGACTGTGATCGTGTACTTGTGTAAGGGGAAGCGAAGGGAGAACGAAGAGCGCAGGCAGAGGGGCAATATTGAACTGAATAATGTTGCAGGGCGGTCGTCTGTGGTGGTGATGGGGCTTGATGGAGCGACCATAGAGAAATATCCGATGATCCGGATTGGTGAAAGTGGACGATTGCCCGACCCGAACAACAACGTGTGCTCCATATGTTTGAGTGAGTACCAACCCCAAGATACTTTAAGGACTATCCCAGATTGTAATCACTACTTCCATGCCAATTGTATAGATGGATGGCTCCACTTGAACGCCACTTGTCCCCTGTGTCGAAAATTACCCGACTCGTAA 1131 0.4792 MAHSSCFVFFLSLFLIYATTTSINTCETYTYCDINEIPIRFPFQLVRDEANNRSDGNRCGYPGFELSCNKSRTIIHLPHSGNFLVDSISYEEQKLWIRDPDGCFPKRFMNKNFNLTDSNFQLSDDYMFMDFTFFNCSSNVTQQFPLPPVPCLSSDLDRNYSVVAVFSDPNFSTPWAARCEPISSASLPYSITDRPFWMDLNADIGLQWNTPSCGNCVARNGRCEFLRDTGLEIACYLPHHGGLSKFAKYGLSFGVGIPGLLCVTVIVYLCKGKRRENEERRQRGNIELNNVAGRSSVVVMGLDGATIEKYPMIRIGESGRLPDPNNNVCSICLSEYQPQDTLRTIPDCNHYFHANCIDGWLHLNATCPLCRKLPDS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0771 376 CDD RING-H2_PA-TM-RING 328 371 - -
Lele52g0771 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 374 - -
Lele52g0771 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 375 IPR013083 -
Lele52g0771 376 Pfam Wall-associated receptor kinase galacturonan-binding 26 99 IPR025287 GO:0030247
Lele52g0771 376 ProSiteProfiles Zinc finger RING-type profile. 329 371 IPR001841 -
Lele52g0771 376 Pfam Ring finger domain 328 371 IPR001841 -
Lele52g0771 376 SUPERFAMILY RING/U-box 323 372 - -
Lele52g0771 376 SMART ring_2 329 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0771 Lele-ChrLele52 4883298 4884626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0771 32 374 C3H Transcription Factor Family AT2G46495 29.714 1.73e-48 166