Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0649 ATGGAGTTATGCGCTTCCTTGTTGTTTCTCAGTTTAATTTCCATGGTCTCTTTTGCGACTTGTGATACTGTGCCCTCAAATGAAGTTTTGGCGCTAACAACCTTTAAAGAAGCTGTATATGAAGACCCATACCTTGTTCTGTCCAACTGGAATACGCTTGATTCAGATCCTTGTGAATGGTTTGGCGTTTCTTGCACTAAAGATCGAGATCATATCATTAAGCTAAATATCTCGGGGTCGTCATTAAGAGGATTTTTAGCGCCAGAATTGGGACAAATCACCTTCTTGCAAGAACTGATTTTGCATGACAACAATCTGATTGGAACAATACCTAAAGAATTGTTCACGTTGAATTCCCTCAAGGTCTTGGATTTGGGGAAGAATCAGTTATCTGGACCAATTCCTCCAGAGATTGGGAATCTAGCTGAAGTTGTTAAAATAAGCCTGCAGTCCAATGGGTTGACTGGTAGGCTACCTCCAGCACTTGGAAATTTGAGATACCTTCAGGAACTTAGGCTGGACAGGAATAAACTTCAAGGACCAGTTCCTGCTGGTAGCAGTTCAAGCATTTCTCCAAATACACGTGGAATGTATGCCTCAAATGCAAATTTAACTGGTCTCTGTCGGTCACCTCAGTTAAAAGTTGCAGATTTTTCATATAACTTCTTTGTAGGTAGCATACCCGCTTGCTTGTTGGAGTATCTACCTAGGTCTAGCTTTCAAGGGAACTGCTTCCAAAGCAATGAATTAAAGCAGCGTTCTTCATTGCAATGTGCTGGTGCTTCACCTGCGAAGAGCCATTCTCTGGCCAATCCAAAGCATCGACCTGCTGAATATGTGGCCAAGCATCATAAAGCATCCCAACCTGCATGGCTTTTGGCTCTAGAAATAGCGACAGGAACCTTGGTTGGTTCTATCTTTCTGGTTGCACTTCTCGCTGCTTTTCTTAAATGTGACAACAAAGCATCTATCATTTGGCCTTGGAAGAAATATGCAAGCCGGAAGGACCATATGACAGTATATATAGACTCTGAGATGCTGAAGGATGTGAGGAGTTTCAGCAGACAAGAGCTTGAAGTGGCATGTGAAGACTTCAGCAACATTATTGGGTCCTCACCAGATAGTGTAGTCTACAAGGGCACCATGAAACGTGGGCCTGAGATTGCTGTAATTTCTCTCTGCATGAAGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGACTAAATCATGAGAACACTGGAAAACTTCTGGGATATTGTAGAGCGAGCTCTCCATTTACAAGGATGCTGATTTTTGAGTATGCTTCAAATGGAACACTCCATGAGTACTTACATTATGGAGAAGGGAGCCAGTTATCATGGACACGGCGTATGAAAATCATTATTGGCATTGCGCATGGACTGAAGTATCTACACACAGAAGTTGACCCTCCATTCACTATATCAGAGTTGAATTCTAATGCTGTATACCTTACAGAAGATTTTGCCCCTACGCTAGTTGATTTTGAGAGCTGGAAGACAATAATTGAAAGGTCTGAAAAGAACTCTGAATCTGTTGGAAGCCAAGGTGCTGTTTGTGTTCTTCCTCAATCTCTCGAGGCACGCCATCACGATCCCCAGGCAAATGTACATGCATTTGGCATACTTCTGCTGGAGATAATAAGTGGGAGACCTCCATATTGCAAGAGCAAAGGCTCCTTGGTAGATTGGGCCAAGGAGTATCTAGAAATGCCAGAGGTAATGTCATATGTGGTGGATCCAGAGTTGAAACATTTCAGATACGAGGACCTCGCAGTAATATGCGAGGTAGTAAATCTCTGTATCAATCCAGACCCCACCAAGCGACCATCGATGACGGAAATATGCAGCATGCTGGAGAGCAGGATTGACACATCGATGAGTGTGGAGTTCAAGTCTTCATCTTTGGCTTGGGCTGAACTTGCACTTTCATCATAG 1986 0.433 MELCASLLFLSLISMVSFATCDTVPSNEVLALTTFKEAVYEDPYLVLSNWNTLDSDPCEWFGVSCTKDRDHIIKLNISGSSLRGFLAPELGQITFLQELILHDNNLIGTIPKELFTLNSLKVLDLGKNQLSGPIPPEIGNLAEVVKISLQSNGLTGRLPPALGNLRYLQELRLDRNKLQGPVPAGSSSSISPNTRGMYASNANLTGLCRSPQLKVADFSYNFFVGSIPACLLEYLPRSSFQGNCFQSNELKQRSSLQCAGASPAKSHSLANPKHRPAEYVAKHHKASQPAWLLALEIATGTLVGSIFLVALLAAFLKCDNKASIIWPWKKYASRKDHMTVYIDSEMLKDVRSFSRQELEVACEDFSNIIGSSPDSVVYKGTMKRGPEIAVISLCMKEEHWTGYLELYFQREVADLARLNHENTGKLLGYCRASSPFTRMLIFEYASNGTLHEYLHYGEGSQLSWTRRMKIIIGIAHGLKYLHTEVDPPFTISELNSNAVYLTEDFAPTLVDFESWKTIIERSEKNSESVGSQGAVCVLPQSLEARHHDPQANVHAFGILLLEIISGRPPYCKSKGSLVDWAKEYLEMPEVMSYVVDPELKHFRYEDLAVICEVVNLCINPDPTKRPSMTEICSMLESRIDTSMSVEFKSSSLAWAELALSS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0649 661 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Lele52g0649 661 ProSiteProfiles Protein kinase domain profile. 363 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0649 661 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Lele52g0649 661 Gene3D Ribonuclease Inhibitor 141 271 IPR032675 -
Lele52g0649 661 Gene3D Phosphorylase Kinase; domain 1 337 444 - -
Lele52g0649 661 SUPERFAMILY Protein kinase-like (PK-like) 338 636 IPR011009 -
Lele52g0649 661 Gene3D Ribonuclease Inhibitor 27 140 IPR032675 -
Lele52g0649 661 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lele52g0649 661 PANTHER PROTEIN MALE DISCOVERER 2 15 659 - -
Lele52g0649 661 Pfam Protein tyrosine and serine/threonine kinase 367 635 IPR001245 GO:0004672|GO:0006468
Lele52g0649 661 SUPERFAMILY L domain-like 26 231 - -
Lele52g0649 661 FunFam Inactive receptor-like serine/threonine-protein kinase 337 444 - -
Lele52g0649 661 Pfam Leucine rich repeat 96 154 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0649 Lele-ChrLele52 4119058 4122710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0649 41 640 Receptor kinase-like Gene Family AT5G45780 28.711 1.22e-58 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lele52g0649 PK_Tyr_Ser-Thr 7.5e-22 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0628 49 3811977 3815517 Lele52g0649 52 4119058 4122710 hybridization
Lele50g0657 50 4030851 4034514 Lele52g0649 52 4119058 4122710 hybridization