Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0645 ATGTACTCGTCAATCGTAGCAGAACGATCCAGGGCATTGCCAAAAATTCTCTGCAACTTCATCTTTGTCCGAAACATGGGTGGGGGTCCTCGGACTTTCCCGGGCGGCGTCAACAAGTGGAAATGGAAGCGCATGCACGAGAAGCGAGCTAGAGATAAAGAGAGAAGGCTTCTCGAACAAGAAAAACAGCTCTACCAGGCTCGTATTCGTTCCCATATCCGAGCCAAAATCGCGGGAAAACCTGACACCTCAAGCGCCACGCACAATCCTATGGCCCCGGAGGACCATATCAAGGCCTTAGCCAATCGATTTATGAAGGAAGGGGCTGAAGATCTCTGGAACAGAAATGACGGTCCGTTGAAGCCTCCGCCTCCGCGTCTCAGAGAATTTCCGGTATCAGGCAGACGGCGAGGATCAATCGCGTCGCCGGTTGATCTGAGGAAACTGGTACCGGAAGGCCGTCACATGTTTTCTGATCGCCAACATGACAATCTGATGAATACAAGTAATTTTACTCAAACCAGGGATTACTCAACGCAACGTCGGAGGAGGTTTCAGAGGAATGAGAGCTCGTCAGAAGAGGAAGACTCTGCTTTTGGTTTGGAGGGAAATCGTGCAAGATCTGTAGTCAGAAATTCATTTAGTATTCATAAAACCCTGAGTAATGCAAATGTGGGTGAGTATATAAACAAGAAGAAAAATATCCTGAAAAGGCCGCGAAAGTTATGGGGAGATGACAGTTCTTCCAGCGAGGGTGAATCGGACATGAATTCAGATGGTTTAGGGATCGTCAGGGGCGTAAATAAGATAGGTAGTAGTGCTTCTTTGGGAAAGTATGACTTTAAGACGAAGAGGAGGGTGCTTCCGAAGTCTTATGACAAGGAGAGTGACCTTTCGGAACAGGTTGACTTGATCAAGTATGAACTAAATAAGAGGAAGATGAACGAGAATGAACAGCAGAAAAGTGAGGAAGATACGTTACTTAGTCAGAAAAGATTTGATGAGTGTGGTATATCGCCACTGACAATCAAGGCACTTTCTTCAGCTGGTTATATTCGCATGACACGAGTTCAAGAGGCTAGCCTTTCTGTTTGCCTTGAGGGCAATGATGCTTTGGTCAAAGCTAAAACTGGCACTGGGAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTTAAGGCGATGAGTGTAAATGCCCCTCAACGTGTGCCTCCAATACTTGTTCTGATTCTGTGCCCTACCAGAGAACTTGCTATTCAAATCACTGCAGAATTAAAAGTTCTACTCAAGTACCATGATGGAATTGGAGTTCAGACTCTAATAGGAGGTATTCGATTTAAAGACGACCAAAAACGTCTTGAATCAGATCCATCACAGATCATTGTTGCTACTCCAGGTAGGTTGCTGGATCATATTGAGTATAAGTCTGGAATATCTCTGCGGTTGATGGGTTTGCAGATGCTCATTTTTGACGAAGGTGATCATTTATTGGACCTGGGCTTTCGAAAGAGTGTAGAAAAGCTTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGCTATTTTCTGCAACCATTCCAAAGGAGGTCCGACGTATATCTCAACTTGTTTTGAAAAGAGATCACACATATATTGACACAGTGGGGATAAATTGTGTGGAAACTCCTGTTAAAGTAAAGCAATCTTATCTTGTTGCTCCTCATGAATCTCATTTTCAAATATTGCACCATATTTTGAGGGAGCATATCTTGCAAGCACCTGATTATAAGGTTATTGTTTTCTGCATAACTAGTATGGTGACTTCACTCTTGTATCAACTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATACATTCCCGAAAACCTCAACTTTATCGAACTCGCATATCGGATGAGTTCAGGGAATCCAAACAACTGATTCTTATCTCGTCTGACGTTACATCTCGAGGAATGAATTATCCTGATGTTAGCTTAGTCATTCAGGTGGGTATTCCTACTGACCGAGAACAATATATCCATCGTGTCGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAATGCATATTGTTAATTGCTCCATGGGAAGAGTACTTTTTGGATGAAATCAAAGATCTCCCTCTCATGAGATTCCCTTTACCAGATATAGATCCTGAGACAAAGCTTAAGGTAGAAAATTCAATGGCGAGGATTGATGATGACGTCAAAGAATCAGCTTATCACACGTGGCTTGGTTATTATAATTCGATAAGGGAGATCGGGAGGGATAAAACCACTCTAAGTGAGCTAGCAAACCAGTTTTCGGAATCAATTGGTTTGCAGAGGCCTCCTGCTCTCTTCAGGAAGACTGCGCTGAAAATGGGATTGAAAGACATTCCTGGCATCAGAATACGTAGATAG 2403 0.4345 MYSSIVAERSRALPKILCNFIFVRNMGGGPRTFPGGVNKWKWKRMHEKRARDKERRLLEQEKQLYQARIRSHIRAKIAGKPDTSSATHNPMAPEDHIKALANRFMKEGAEDLWNRNDGPLKPPPPRLREFPVSGRRRGSIASPVDLRKLVPEGRHMFSDRQHDNLMNTSNFTQTRDYSTQRRRRFQRNESSSEEEDSAFGLEGNRARSVVRNSFSIHKTLSNANVGEYINKKKNILKRPRKLWGDDSSSSEGESDMNSDGLGIVRGVNKIGSSASLGKYDFKTKRRVLPKSYDKESDLSEQVDLIKYELNKRKMNENEQQKSEEDTLLSQKRFDECGISPLTIKALSSAGYIRMTRVQEASLSVCLEGNDALVKAKTGTGKSAAFLLPAIETVLKAMSVNAPQRVPPILVLILCPTRELAIQITAELKVLLKYHDGIGVQTLIGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISLRLMGLQMLIFDEGDHLLDLGFRKSVEKLVDCLPRQRQSLLFSATIPKEVRRISQLVLKRDHTYIDTVGINCVETPVKVKQSYLVAPHESHFQILHHILREHILQAPDYKVIVFCITSMVTSLLYQLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILISSDVTSRGMNYPDVSLVIQVGIPTDREQYIHRVGRTGREGKEGECILLIAPWEEYFLDEIKDLPLMRFPLPDIDPETKLKVENSMARIDDDVKESAYHTWLGYYNSIREIGRDKTTLSELANQFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0645 800 SMART helicmild6 603 684 IPR001650 -
Lele52g0645 800 Coils Coil 304 324 - -
Lele52g0645 800 MobiDBLite consensus disorder prediction 177 201 - -
Lele52g0645 800 Pfam DEAD/DEAH box helicase 355 533 IPR011545 GO:0003676|GO:0005524
Lele52g0645 800 MobiDBLite consensus disorder prediction 113 145 - -
Lele52g0645 800 MobiDBLite consensus disorder prediction 240 261 - -
Lele52g0645 800 Gene3D - 555 780 IPR027417 -
Lele52g0645 800 PANTHER RNA HELICASE 297 722 - -
Lele52g0645 800 Coils Coil 43 63 - -
Lele52g0645 800 Gene3D - 308 547 IPR027417 -
Lele52g0645 800 SMART ultradead3 350 561 IPR014001 -
Lele52g0645 800 MobiDBLite consensus disorder prediction 157 201 - -
Lele52g0645 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 701 IPR027417 -
Lele52g0645 800 Pfam Helicase conserved C-terminal domain 578 683 IPR001650 -
Lele52g0645 800 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 362 545 IPR014001 -
Lele52g0645 800 CDD SF2_C_DEAD 560 693 - -
Lele52g0645 800 MobiDBLite consensus disorder prediction 162 176 - -
Lele52g0645 800 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 331 359 IPR014014 GO:0003724
Lele52g0645 800 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 579 729 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0645 Lele-ChrLele52 4082053 4085980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0645 333 709 Eukaryotic Initiation Factors Gene Family AT3G19760 29.114 1.51e-43 161