Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0641 ATGACATTCATCAAAAGCTTCCCTGTCTTCTCCTTCCTTCTGGCTCTTGCCTTCTCTTTCACCCACGCCGCCAGGTTTGACGTCACAAACAAATGCTCCTATACCGTGTGGGCGGCCGCCGTGCCTGGTGGTGGAAGACAGTTGAACTCCGGCGAGACATGGAGCTTTGACGTGGCTGGGGGCACCACCGGGGCTCGCATATGGGCCCGAACCAAGTGCAACTTCGACGGGTCGGGTCGTGGACACTGTGAAACTGGTGATTGTGGAGGTTTACTCCAATGCCAAGCCTATGGATCTCCCCCGGACACACTCGCAGAATTTGCCCTTAACCAATACAATAACATGGACTTCTATGATATTTCATTGGTCGACGGTTTCAATGTTCCCATGGAGTTCAGTCCGACATCTAATGGGTGCACACGTGCCATCCGATGTACCGCCGACATCATCGGACAGTGCCCTGGCCAGTTGAAAACTCAAGGTGGCTGCAATAATCCCTGCACTGTGTTTAAGACAGATCAGTACTGTTGCAACTCAGGAAGCTGTGGACCCACCGATTATTCTAAGTTCTTTAAGGATAGGTGCCCTGATGCTTATAGTTACCCTAAGGATGATGCCTCCAGCACTTTCACTTGCCCAGGAGGAACCAACTACAGGGTTAAAATCTCTTCAACAGTATTGATTTCCTTTGCATATGTGGGAGAGAGAGGAAAGAAGTGGTATATAAGATTGTGGGCAAAAAACGAGTATAAAAGAATGTTAAAACACGACCGAGGGATTTCTTGCGGCTTGTGCGAGATAGATCTCTGCGATTCCTCTCGGATTCTCTTTCTCTTCAATTCATTCTCTGCGATCCGATCATCGAAGAAGATGCCTCAGGGAACCCTTGAAGTCCTTCTGGTTAGTGCCAAGGGTCTCGAGAATACCGATTTTCTCAGCAACATGGATCCTTATGTGATCCTCACCTGTCGCACTCAGGAGCAGAAAAGCAGCGTAGCATCAGGGAAAGGATCTGATCCGGAATGGAATGAAACTTTTGTTTTCAACTTGACCGGCGAAGTTTCGGAACTCACATTGAAGATCTTGGACAGCGATGTTGGCACAAATGATGATAACGTAGGAGAAGCAACCATCCCACTAGATGCTTTGTTCACTGAAGGAAGCATCCCTCCTACGGCATACAATGTTGTGAAGGATGAGGAGTATCGCGGAGAGATTAAAGTTGGCCTCACTTTTACCCCCGAGGAGCGAAGCAGCGAATATGTGCAAGAGGAAAGCTTAGGTGGGTGGAGGGAATCTAGCAGAGACTATTAA 1314 0.4855 MTFIKSFPVFSFLLALAFSFTHAARFDVTNKCSYTVWAAAVPGGGRQLNSGETWSFDVAGGTTGARIWARTKCNFDGSGRGHCETGDCGGLLQCQAYGSPPDTLAEFALNQYNNMDFYDISLVDGFNVPMEFSPTSNGCTRAIRCTADIIGQCPGQLKTQGGCNNPCTVFKTDQYCCNSGSCGPTDYSKFFKDRCPDAYSYPKDDASSTFTCPGGTNYRVKISSTVLISFAYVGERGKKWYIRLWAKNEYKRMLKHDRGISCGLCEIDLCDSSRILFLFNSFSAIRSSKKMPQGTLEVLLVSAKGLENTDFLSNMDPYVILTCRTQEQKSSVASGKGSDPEWNETFVFNLTGEVSELTLKILDSDVGTNDDNVGEATIPLDALFTEGSIPPTAYNVVKDEEYRGEIKVGLTFTPEERSSEYVQEESLGGWRESSRDY 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0641 437 FunFam Thaumatin I 24 224 - -
Lele52g0641 437 Pfam Thaumatin family 30 221 IPR001938 -
Lele52g0641 437 SMART C2_3c 295 392 IPR000008 -
Lele52g0641 437 MobiDBLite consensus disorder prediction 415 437 - -
Lele52g0641 437 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 289 415 IPR035892 -
Lele52g0641 437 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Lele52g0641 437 ProSiteProfiles Thaumatin family profile. 23 220 IPR001938 -
Lele52g0641 437 Pfam C2 domain 294 386 IPR000008 -
Lele52g0641 437 ProSiteProfiles C2 domain profile. 277 393 IPR000008 -
Lele52g0641 437 SUPERFAMILY Osmotin, thaumatin-like protein 24 220 IPR037176 -
Lele52g0641 437 SMART tha2 26 220 IPR001938 -
Lele52g0641 437 Gene3D C2 domain 292 415 IPR035892 -
Lele52g0641 437 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Lele52g0641 437 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Lele52g0641 437 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Lele52g0641 437 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Lele52g0641 437 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Lele52g0641 437 PRINTS Pathogenesis-related protein signature 214 223 IPR001938 -
Lele52g0641 437 Gene3D Thaumatin 24 223 IPR037176 -
Lele52g0641 437 PANTHER OS03G0233200 PROTEIN 12 221 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0641 Lele-ChrLele52 4062112 4066650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0641 12 220 Receptor kinase-like Gene Family AT5G38280 35.865 2.27e-37 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0649 50 3980235 3982352 Lele52g0641 52 4062112 4066650 hybridization