Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0639 ATGGCGCCATTGCCGGTGGAGCAGACCGGTGAATCAGCAACCACTGATTCGCAGAGATCTATTCCGACGCCGTTTCTGACGAAAACCTATCAGCTTGTGGATGAACCCTCTGTGGATGAGCTGATTTCCTGGAATGAAGATGGAACGAGTTTCATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTGCTTCCCAAGTATTTCAAGCACAATAACTTTTCCAGTTTCGTCCGTCAACTAAATACCTATGGATTTCGGAAGGTTGTCCCGGATCGTTGGGAATTCGCTAATGACTGTTTCCGGCGAGGCGAGAGAAGCCTTCTTCGAGACATTCAACGGCGGAAAATATCGCCGACATCTACCACAGGTGTAGGTGCGGCCAATACAGTGACGGTGGCTGCAGTACCTGCCGCCGCCATAGGGGTGTCTCCGACTAACTCCGGTGAGGAACAGGTAATCTCTCCCAACACATCTCCGATTGCCGCAAATACTGCAGTGCAGCGCACCACAAGTTGCACCACTGCACCCGAGCTCTTAGAAGAGAATAACAAGCTTAGGAAAGAGAACATGCAATTGAGTGATGAATTGAGTCAATTGAAGGGGCTTTGTAATAACATACTAACATTGATGACGAATTATGCTTCAAGCCAATTAGAATCCAGTAGTGCTGCTGAAGGAAAACCGTTGGAGCTTTTACCTACGACGCAGCTTTCGGCTGAGGAAGTAGCCATCGTAGGAGGAGGCGGCGGGGCTTCGCAAGAGATGAAAGTTGCAGAAGCGGAGGTGCCCAAATTGTTTGGGGTTTCAATTGGGGCAAAACGGCGTCGGAGTTCAGAGGGTGAGGAGGCAGAAAAAGAACAGAATCAAGCACAGTCGTCCCATGAACCCGACGGTGGCTCCGATGTAAAAACAGAGCCACTAGATGGTAGTAACTCCGACGATCAGGAGACACCCTGGTTGGAGCTTGGGAAACAATAA 978 0.499 MAPLPVEQTGESATTDSQRSIPTPFLTKTYQLVDEPSVDELISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERSLLRDIQRRKISPTSTTGVGAANTVTVAAVPAAAIGVSPTNSGEEQVISPNTSPIAANTAVQRTTSCTTAPELLEENNKLRKENMQLSDELSQLKGLCNNILTLMTNYASSQLESSSAAEGKPLELLPTTQLSAEEVAIVGGGGGASQEMKVAEAEVPKLFGVSIGAKRRRSSEGEEAEKEQNQAQSSHEPDGGSDVKTEPLDGSNSDDQETPWLELGKQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0639 325 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lele52g0639 325 FunFam Heat stress transcription factor B-4 17 115 - -
Lele52g0639 325 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0639 325 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0639 325 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0639 325 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0639 325 MobiDBLite consensus disorder prediction 1 21 - -
Lele52g0639 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 301 IPR027725 -
Lele52g0639 325 Coils Coil 175 202 - -
Lele52g0639 325 MobiDBLite consensus disorder prediction 274 291 - -
Lele52g0639 325 MobiDBLite consensus disorder prediction 268 325 - -
Lele52g0639 325 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0639 325 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g0639 325 Gene3D - 17 115 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0639 Lele-ChrLele52 4052842 4053932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0639 16 324 HSF AT4G11660 55.319 5.38e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele52g0639 HSF_DNA-bind 2.3e-32 CL0123