Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0638 ATGGGTAAGGTATCAAAATGGTTTCGTGGTCTTCTTAATCTTAAAAGGCCCTATTGCTCATCTCACACTCCCACCACCTCTGTTCCAAAACCACCCAAAGAGAAACGCAGATGGAGCTTCGTCAAATGTTACAGACAAAACGATAACCTCCCTACCACCGCCACTGTTAAAACCGACATTCATCACAATAATGACAGTCATGCGATCGCCGTGGCTGCAGCCTCTGCACATAGACTTCGTAGCGGCATCGGATGCGTCCGAGCCACGGTAGAGAGCACCGCTAACCGTGAAGAATGGGCAGCCGTTAAGATTCAAGCCACTTTTCGAGGCTTTTTGGCAAGAAGAGCCCTGCGAGCGCTGAAAGGATTAGTAAAGCTGCAGGCATTGGTGAGAGGTCAGTTGGAGAGGAAGCGGACCGCTAAGTGGCTGCCAAAAATGCAATTACTCTTACGAGCTCAGGCTCCAGTTCAGGCGGGGCGGCTTAAGTCATCTTTGATCGCTAAGTCATCAAATGTCCACCTCCATGGTCCGGCAACACCTGACAAAGTTGAAAACCCCATCAGATCCAAGAGCATGAAATATGATCAATCATCAATACTCAAGAGAGATAATTCCAAATCCTATGCTCAGATCAGTGGCAATAAGGAGAAGTGTTGGAAGACAACAGACAGTTGGGTAGACGAGAAATCATGGAATCGACAAAGATCGTCCATAAGAACCTGCGTGGACGATGAAAGAAACGTAAGGATCCTGGAAATGGATTCTGAAAAGAGAAACTTCGCACCAAAACGCAGAGCCAGAACCCTCTTCCACTCCGCTAATCTTGCTTTACTTTCTTATCCTTATAGTCAGACTTTGACGACCACCATAAAGAACTCAACAATTCATCATTCCGGCCCAATCCATCGTGGAGTTCATCAATCTTACAGCCCACCAGAAGGGCATGAAGTTGATGGGACCCCATTCTGCACAGCAAACACTAGTCCTCAGTTTTTTTCTGGGTCCTCTAGGGATGGTAGCTCTAAAAGAAGCCCTTTTACTCCTAGTAGGAGTGATGGTTCAAGAAGCTATGTAAGTGCTTATTCTGACTGCCCAAATTATATGGCTTATACAGAATCTTCCAAGGCAAAAGTCAGATCTCTGAGTGCTCCAAAACAGAGGGCAAGATATGAGAGGTCTGGTTCGTCTAATAGGTACACGATGAACGGATGTGGTGAGTCAAGATTCGGTACACAGAAGGCACCTGATTTGCATGCAAGCTTCACTACCAAAGCCTATCCAGGTTCTGGTCGTTTGGATAAGTCTGGTTTGCCCACGAATCAAGAAATCAAATACGTAGATGTAAGCCAACTGCCGAGGTTGTGGGATGGAGCTATCTTTCTTTGTATTGCTTTGTTAATGTTATCTGGTTCTGTTTCTCGATCCTTTCGATGGTTTGTAGGGGCCCTTGAGGCTCTTCATATCATACTAGGTACGCGGATACGGTGTCGGTCAGAGTGTCCGGATCCGGATCCGGATCCGGATCCGGGTATAACTCGGTCACCTTCGATTCGCCGTCTCAACCCTTTGAAGTTGAGTTCGTGTTCCCGTTTTCTAAGACGATTTATCATTTCATCCTCGATTTCACGTAAAGCGCTTGATTTCCTCGCTGATTTGAAGCTTAGCTTGTCGCCCCACTTGAAGGGTACGCAAGAGATGGCAACGACTAGGTCACCAAATCGTTACTCCGACGACATAGTCGATTCGACGCCGTTCATAGCAAATTCAGGTGGGTCTTCCGATGAGTTCAATTCTGGTCGTCGATTTGTTCGCAGGCAGAGCCTTCGCCAAGCTGCTCGGTTCCTGAGGCAGGCCAGTGGCCGTAGGATGATGCGCGAGCCATCGATGCTTGTCAGAGAGACTGCGGCCGAGCAATTGGAGGAGAGACAGGGAGATTGGGCTTATTCTAAGCCCGTTGTTATCCTTGATATTATTTGGAACTTCGTCTTTGTTGTCGCGGCTGCTACGATTTTAATTTTGAGTCGAGGCGAGTCGCCGAGCATGCCTTTGAGGCTGTGGATTGTGGGCTACGCTCTGCAATGCATCCTTCACGTGTTCTGCGTTTGCGTTGAATATAAGAGACGGAGGCGGCTCCGGCAGCGCCAGTTTCCACCATCCTTGGACGCAGTGAACGGAAGGGCAGGCAGCAGTGGGAATCTGAGTCTGGGTTCAAGGGATGGTTCTGGGCACTATGTGTCATTGGCGGAATTCAACGAAGAGGGTACAAGTGTAGCGAAGCATTTGGAGTCAGCGAACACAATGTTTTCATTTATCTGGTGGATCGTTGGATTTTACTGGGTATCCGCTGGTGGTCAAAATTTAGTCCTTGATTCTCCATTTTTATACTGGTTATGTATAGCTTTCCTGGGTTTTGATGTTTTCTTTGTTGTATTCTGTGTCGCGCTGGCATTCATCATCGGTATTGCTGTATGCTGTTGCCTTCCATGTATTATTGCACTTCTATATGCCGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAACAGCTGGCTAAATTTAAATTCCGAAGAATTGACAATGATGAGAAACTTGCTGGTAACGCACAAGAACCAGTTGGTGGAATAATGACTGGGTGCGGCACTGATTCACCGAATGAACACATTCTTTCTGAGGAGGATGCTGAATGCTGCATCTGTCTATCTGCTTATGATGATGGTGCTGACCTCAGAGAACTTCCTTGCGGTCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTGTACATCAATGCTACTTGTCCTCTCTGCAAGTATAACATCTTGAAGAGAATCAACCAAGAGGAAGCTTAG 2853 0.4714 MGKVSKWFRGLLNLKRPYCSSHTPTTSVPKPPKEKRRWSFVKCYRQNDNLPTTATVKTDIHHNNDSHAIAVAAASAHRLRSGIGCVRATVESTANREEWAAVKIQATFRGFLARRALRALKGLVKLQALVRGQLERKRTAKWLPKMQLLLRAQAPVQAGRLKSSLIAKSSNVHLHGPATPDKVENPIRSKSMKYDQSSILKRDNSKSYAQISGNKEKCWKTTDSWVDEKSWNRQRSSIRTCVDDERNVRILEMDSEKRNFAPKRRARTLFHSANLALLSYPYSQTLTTTIKNSTIHHSGPIHRGVHQSYSPPEGHEVDGTPFCTANTSPQFFSGSSRDGSSKRSPFTPSRSDGSRSYVSAYSDCPNYMAYTESSKAKVRSLSAPKQRARYERSGSSNRYTMNGCGESRFGTQKAPDLHASFTTKAYPGSGRLDKSGLPTNQEIKYVDVSQLPRLWDGAIFLCIALLMLSGSVSRSFRWFVGALEALHIILGTRIRCRSECPDPDPDPDPGITRSPSIRRLNPLKLSSCSRFLRRFIISSSISRKALDFLADLKLSLSPHLKGTQEMATTRSPNRYSDDIVDSTPFIANSGGSSDEFNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMLVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVVAAATILILSRGESPSMPLRLWIVGYALQCILHVFCVCVEYKRRRRLRQRQFPPSLDAVNGRAGSSGNLSLGSRDGSGHYVSLAEFNEEGTSVAKHLESANTMFSFIWWIVGFYWVSAGGQNLVLDSPFLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLAKFKFRRIDNDEKLAGNAQEPVGGIMTGCGTDSPNEHILSEEDAECCICLSAYDDGADLRELPCGHHFHCACVDKWLYINATCPLCKYNILKRINQEEA 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0638 950 Pfam Protein of unknown function (DUF4005) 329 392 IPR025064 -
Lele52g0638 950 ProSiteProfiles IQ motif profile. 97 125 IPR000048 GO:0005515
Lele52g0638 950 PANTHER TARGET OF ERK KINASE MPK-1 618 942 - -
Lele52g0638 950 SUPERFAMILY RING/U-box 888 944 - -
Lele52g0638 950 Pfam IQ calmodulin-binding motif 99 118 IPR000048 GO:0005515
Lele52g0638 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 881 947 IPR013083 -
Lele52g0638 950 MobiDBLite consensus disorder prediction 328 357 - -
Lele52g0638 950 FunFam E3 ubiquitin-protein ligase At1g12760 883 948 - -
Lele52g0638 950 ProSiteProfiles Zinc finger RING-type profile. 897 938 IPR001841 -
Lele52g0638 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 142 IPR027417 -
Lele52g0638 950 SMART iq_5 96 118 IPR000048 GO:0005515
Lele52g0638 950 SMART iq_5 119 140 IPR000048 GO:0005515
Lele52g0638 950 SMART ring_2 897 937 IPR001841 -
Lele52g0638 950 Gene3D - 94 145 - -
Lele52g0638 950 CDD RING-H2_RNF111_like 896 940 - -
Lele52g0638 950 ProSiteProfiles IQ motif profile. 121 147 IPR000048 GO:0005515
Lele52g0638 950 Pfam Ring finger domain 896 938 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0638 Lele-ChrLele52 4039309 4047243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0638 604 948 C3H Transcription Factor Family AT1G68070 50.720 3.15e-110 342