LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g0628	ATGAACGCTTTCAGAACTTTCACAAGTAACTCAGAGTCATCTCACTCCGACGAAGAAGCGATCACATTAGCGTCGGAGAAACCGAAGAAGCGAGCCGGACGTAGGGTGTTTAAGGAGACAAGACATCCTGTGTACCGAGGAGTTCGTCGCCGGGACAACGACAAGTGGGTCTGCGAGGTTCGTGTTCCTAATAACAACAAATTAAGGATCTGGCTTGGAACTCATTCGACTCCTGAGAAAGCCGCCAGAGCACACGATGTTGCTGCTCTAGCACTTCGTGGTAAGTCGGCTTGTCTCAATTTCGCAGACTCCGCGTGGCGGCTTACTGTGCCGGCGTCCACCGATCCCGACGAGATACGGCGAGTGGCGATGGAGGCGGTGGAGGCATTTGACGATGACGAAGTGTATTGTAGCAGTACGGGGACAATGGGATCATTGGGAGAAGCTAACGTTGGTATGAGTAGTGTTGAAGTGGGGGTTTCAGAGTTTGAAGATGATCGGGTTTTGTTTAGCTTGGCGGATGAGCCGTTGAGGTCTCCCCCAGCGGCTTATTCTCTGGGAACACACGGGTGGGACTGGAGAGACGAAGTGGACCAGGTGGATAATGAGGTGTCACTTTGGAGCTTTACCGTTGACTGA	639	0.5243	MNAFRTFTSNSESSHSDEEAITLASEKPKKRAGRRVFKETRHPVYRGVRRRDNDKWVCEVRVPNNNKLRIWLGTHSTPEKAARAHDVAALALRGKSACLNFADSAWRLTVPASTDPDEIRRVAMEAVEAFDDDEVYCSSTGTMGSLGEANVGMSSVEVGVSEFEDDRVLFSLADEPLRSPPAAYSLGTHGWDWRDEVDQVDNEVSLWSFTVD	212

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g0628	212	ProSiteProfiles	AP2/ERF domain profile.	44	102	IPR001471	GO:0003700\|GO:0006355
	Lele52g0628	212	CDD	AP2	45	104	IPR001471	GO:0003700\|GO:0006355
	Lele52g0628	212	Pfam	AP2 domain	43	94	IPR001471	GO:0003700\|GO:0006355
	Lele52g0628	212	Gene3D	AP2/ERF domain	44	103	IPR036955	GO:0003700\|GO:0006355
	Lele52g0628	212	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lele52g0628	212	PRINTS	Ethylene responsive element binding protein signature	45	56	IPR001471	GO:0003700\|GO:0006355
	Lele52g0628	212	PRINTS	Ethylene responsive element binding protein signature	68	84	IPR001471	GO:0003700\|GO:0006355
	Lele52g0628	212	SMART	rav1_2	44	108	IPR001471	GO:0003700\|GO:0006355
	Lele52g0628	212	SUPERFAMILY	DNA-binding domain	44	104	IPR016177	GO:0003677
	Lele52g0628	212	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lele52g0628	212	MobiDBLite	consensus disorder prediction	19	33	-	-
	Lele52g0628	212	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	9	208	IPR045277	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g0628	Lele-ChrLele52	3979612	3980250	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g0628	21	209	AP2-EREBP Transcription Factor Family	AT1G63030	56.085	9.96e-62	189

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele52g0628		AP2	9.2e-13	CL0081