Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0622 ATGCAATCAGAACCGATCTTGGGGATGATGGGTGGTGGTTTTAACGGACAAGTAGATTCCGATGACCACTTCCGGCAACTCAAGGCGGAGATAGTCACCCACCCTCTCTATGACCAGCTTCTCTCTGCACACGTCTCTTGCTTACGTGTCGCCACTCCCATCGATCAGCTTCCACTCATCGACGCTCAGTTATCGCAGTTCCACCATATCCTCCGATCATACGCCTCCCAGCAAACCCATACCCTTTCTCTCCCTGAGCGTCAGGACCTTGACAATTTCCTGGCACAATATTTGTTAGTGTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAAAGTCCATGCCGTCGAAGCTGTCATGGCCTGCCGTGATATTGAAAATACCCTACAAGCTCTCACTGGTGTAAGTTTGGGTGAGGGAAGTGGTGCAACAATGTCAGATGATGAGGATGATTTGCCAATGGATTTCTCTTTAGATCAATCTGGCGCTGAAGCTCACGACATGATGGGATTTGGTCCTTTGCTTCCTACCGAATCTGAAAGGTCACTCATGGAAAGAGTTCGTCAGGAACTCAAGATTGAGCTCAAGCAGGGTTTCAAGTCAAAAATTGAAGATGTGAGAGAGGAAATATTAAGGAAAAGAAGAGCAGGCAAGTTACCTGGAGACACAACCTCAGTGTTGAAGAACTGGTGGCAGCAACATTCAAAGTGGCCCTACCCAACTGAAGATGATAAGGCAAAACTGGTGGAGGAGACAGGTCTGCAGCTGAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCAGTCACCTCTTTGAAGTCCAAGCGCAAGAGACTGGAGAAAATGATCTGTATTTGGGCCATACAAGCGTTGCCGAGATCTGGCTTGAAAGGAATTGAAGAGAAGAAGCAGATCCCATCTTGCTCTCAGGAGATGGGCTTCCCAGCTAACGGCGCCTCCGGCGATAAGCCCCTCAAGTTCCTGATCTTCGGCCGCACCGGCTGGATTGGCGGTTTCCTCGGCAAACTCTGCCAAGCTCAGGGGATCGACTTCGAATACGGCTCCGGCCGCCTTGAGAACCGCCCTTCTTTGGAAGCCGACATCGCTAACGTAAAGCCGACTCACGTGTTCAACGCTGCTGGAGTCACAGGGCGCCCGAATGTTGACTGGTGCGAATCTCACAAGGTCGAAACCATTAGGACCAACGTGGTGGGCACTCTGAACTTGGCCGATGTGTGCAGGGAGAGAGGCCTCATCCTCATCAACTATGCCACTGGCTGCATCTTCGAGTACGACTCCGATCACCTCCTCGGATCCGGCATCGGCTTCAAGGAAGAGGACACTCCCAATTTCATCGGATCCTTCTATTCCAAGACCAAGGCCATGGTGGAAGATCTGCTCAAGAACTATGAGAATGTTTGTACCTTGCGCGTCAGAATGCCTATCTCGTCAGATTTATCTAACCCACGCAATTTCATCACAAAGATCACTCGATATGAGAAGGTAGTGAATATTCCAAATTCAATGACTATATTGGATGAACTGCTTCCCATTTCCTTAGAAATGGCAAAGAGAAACCTCACTGGCATCTGGAATTTCACAAACCCTGGAGTGGTAAGCCACAACGAAATCTTGGAGATGTACAGGGAATATGTTGACCCCAAATTTGAATGGAGGAACTTTACCCTTGAGGAGCAGGCTAAGGTAATAGTTGCCCCCAGGAGCAACAATGAGCTTGACGCTTCTAAATTGAAGAAAGAATTCCCTGATCTCTTGCCTATCAAGGAATCCCTCATTAAGCATGTTTTCCAGCCTCAGAGTCAGAAAGTTAAAGCTTGA 1869 0.4831 MQSEPILGMMGGGFNGQVDSDDHFRQLKAEIVTHPLYDQLLSAHVSCLRVATPIDQLPLIDAQLSQFHHILRSYASQQTHTLSLPERQDLDNFLAQYLLVLCTFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLPMDFSLDQSGAEAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSKIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRLEKMICIWAIQALPRSGLKGIEEKKQIPSCSQEMGFPANGASGDKPLKFLIFGRTGWIGGFLGKLCQAQGIDFEYGSGRLENRPSLEADIANVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADVCRERGLILINYATGCIFEYDSDHLLGSGIGFKEEDTPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISLEMAKRNLTGIWNFTNPGVVSHNEILEMYREYVDPKFEWRNFTLEEQAKVIVAPRSNNELDASKLKKEFPDLLPIKESLIKHVFQPQSQKVKA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0622 622 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Lele52g0622 622 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Lele52g0622 622 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Lele52g0622 622 FunFam homeobox protein knotted-1-like 3 isoform X1 212 273 - -
Lele52g0622 622 Gene3D - 210 285 - -
Lele52g0622 622 PANTHER DTDP-4-DEHYDRORHAMNOSE REDUCTASE 335 616 IPR005913 -
Lele52g0622 622 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 333 608 IPR036291 -
Lele52g0622 622 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Lele52g0622 622 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Lele52g0622 622 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Lele52g0622 622 Pfam RmlD substrate binding domain 336 508 IPR029903 -
Lele52g0622 622 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Lele52g0622 622 SMART HOX_1 213 278 IPR001356 GO:0003677
Lele52g0622 622 CDD dTDP_HR_like_SDR_e 336 608 - -
Lele52g0622 622 Pfam KNOX2 domain 86 134 IPR005541 GO:0003677|GO:0005634
Lele52g0622 622 CDD homeodomain 214 275 IPR001356 GO:0003677
Lele52g0622 622 Gene3D - 328 621 - -
Lele52g0622 622 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 326 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0622 Lele-ChrLele52 3906349 3914633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0622 4 287 Homeobox Transcription Factor Family AT1G62990 77.586 5.25e-163 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele52g0622 RmlD_sub_bind 1.6e-13 CL0063