Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0620 ATGGATTCACGTATTTGTGGTTTGAGAATAATACCTGTTAAGTGCTTTGAAGCAGGATATTGGAATAAGAGAAGGAAGGTGGGTGGAGCAGACATATCCATCCATCCATCAATCAGCCATCTAGCTTTGTGGAGATATTCTGGGAATCAAATAGCTCAGAGGTGTGAAACGATGGTGAGAGGAAAAACTCAGATGAAGCGCATAGAAAATGATACGAGCAGGCAAGTGACCTTCTCGAAGCGAAGAAGCGGGCTGCTTAAGAAGGCTTTTGAGCTGTCTGTGCTATGCGACGCTGAAGTTGCACTCATTATCTTCTCGCCCAGAGGCAGGGTTTCTGAGTACTCCAGTTCTAGTGTGAATAAAACGGTTGAACGCTATCTAAGGAAAGTCAAGGACCGTGGCCTCGCCACCAGAGGAAGCCAAGCAAATACGCAGCAAGGTACTATTAACATGACTAAGAAGATAGAGCATCTTGAAGTTCTTAGAAGGAAGCTTCTGGGAGATGGTTTGGATGCTTGTTCTATTGACGAGTTACGTCAGATAGAGAACCAGCTTGAACAAAGTTTAGCCAAAATTAGGGCAAGAAAGAATCAACTGTTCAAGGAACAGAAAGAGGAGCTAAGAGAAGAGGAAAAGCACTTGCTGGAAATAAATAAAGACTTACGGGAGCAGTTGTCACAGTGGGGCGATGAACTACAGCGGCGGAATCCGGCTGAAGAGCAGGATGAAGTTGAGCACTTGAAGGAAGGGACGGATGGCGTGGAGACAGAGCTGGTTATAGGACCACCGGAGAGACGAATGCCTTGA 807 0.4585 MDSRICGLRIIPVKCFEAGYWNKRRKVGGADISIHPSISHLALWRYSGNQIAQRCETMVRGKTQMKRIENDTSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGRVSEYSSSSVNKTVERYLRKVKDRGLATRGSQANTQQGTINMTKKIEHLEVLRRKLLGDGLDACSIDELRQIENQLEQSLAKIRARKNQLFKEQKEELREEEKHLLEINKDLREQLSQWGDELQRRNPAEEQDEVEHLKEGTDGVETELVIGPPERRMP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0620 268 Coils Coil 175 227 - -
Lele52g0620 268 ProSiteProfiles K-box domain profile. 141 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele52g0620 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 67 114 IPR002100 GO:0003677|GO:0046983
Lele52g0620 268 PRINTS MADS domain signature 95 116 IPR002100 GO:0003677|GO:0046983
Lele52g0620 268 PRINTS MADS domain signature 80 95 IPR002100 GO:0003677|GO:0046983
Lele52g0620 268 PRINTS MADS domain signature 60 80 IPR002100 GO:0003677|GO:0046983
Lele52g0620 268 ProSiteProfiles MADS-box domain profile. 58 118 IPR002100 GO:0003677|GO:0046983
Lele52g0620 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 60 226 - -
Lele52g0620 268 SUPERFAMILY SRF-like 60 130 IPR036879 GO:0003677|GO:0046983
Lele52g0620 268 SMART madsneu2 58 117 IPR002100 GO:0003677|GO:0046983
Lele52g0620 268 Pfam K-box region 141 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele52g0620 268 ProSitePatterns MADS-box domain signature. 60 114 IPR002100 GO:0003677|GO:0046983
Lele52g0620 268 MobiDBLite consensus disorder prediction 228 253 - -
Lele52g0620 268 MobiDBLite consensus disorder prediction 228 268 - -
Lele52g0620 268 Gene3D - 70 137 IPR036879 GO:0003677|GO:0046983
Lele52g0620 268 CDD MADS_MEF2_like 60 127 IPR033896 GO:0000977|GO:0045944
Lele52g0620 268 FunFam Agamous-like MADS-box protein AGL13 70 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0620 Lele-ChrLele52 3883806 3888323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0620 58 266 MADS-box Gene Family AT4G22950 55.660 3.61e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele52g0620 K-box 1.8e-21 No_clan