Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0596 ATGCATGAGTTGTTGCTTTTAAATATGGAAGCCAGGGATGGAATTAGCAGTGCAGTCACGGTGGTCGGATCAGATGATCCGTCGGAGTACCATGTAGCTCCTAGGACCGAGAACCCGGCAACCACTGGCGGATCGACAACGCCTACGCCGGCTCCGGCGACTCAAGGGAGTGCTCCTCCGCCGCAGACGGCAGCGGCAGGAGGTACGCCGGGAACATGGACGATGCCGGGGAAGAAGAAAAGAGGCCGACCAAGAAAGTACGGACCAGACGGGTCGGTGACCATGGCTCTATCTCCGAAACCAATATCTTCTTCGGCTCCACCCCACGTCATCGATTTCTCCGCAGATAAGCGCGGGAAAGTTCGTCCAGTTAGTTCGGTCAGCAAATCCAAATTCGAGGTTGAGAATATAGGTGAATGGGTTGCATGCTCCGTAGGTGCTAATTTTACACCCCATATAATCACTGTTAATGCGGGTGAGGACGTTACTATGAAGATAATATCATTTTCTCAGCAAGGACCTCGAGCTATATGTATTCTTTCTGCAAATGGTGTCATATCAAGTGTCACGCTTCGTCAACCTGATTCTTCTGGCGGCACATTGACCTATGAGGGACGTTTTGAAATTCTGTCGTTGTCTGGGTCCTTCATGCCAAGTGAAAGTGGGGGAACACGAAGCAGATCTGGCGGCATGAGCGTTTCGTTGGCAAGTCCAGATGGTCGTGTCGTAGGTGGCGGAGTGGCAGGTCTATTAGTAGCAGCAAGTCCTGTGCAGGTAGTGGTAGGAAGCTTTCTGGCTGGAAACCAGCATGAGCAAAAGCCAAAGAAACAGAAAATTGAGGTCATATCCACAGCCATACCAACTTCTGTTGTTCCCTTGTCTAGTGTTGTTACCGATCCGGTCCCTCTCCTCACCTCTTCATCTTCCTTCCGCGGCGATAGTTGGTCTGCAATCCCGGCAGATAACAGGAATAACACCACCACCACCACCAATGCTAATGCCAACAATAATAATAAATCAACTGATATTAATGTGTCACTGTCTGGAGGTATCTTAGGACCACCTTGTTTTCCGACATTTACAGGCTTCCTTTCCTTGTACAATTCAATTAGGGGATTAGATCTGCCTCTGCGGCCAATGTGGTGTCATGTTTTGATGTATTAG 1164 0.4948 MHELLLLNMEARDGISSAVTVVGSDDPSEYHVAPRTENPATTGGSTTPTPAPATQGSAPPPQTAAAGGTPGTWTMPGKKKRGRPRKYGPDGSVTMALSPKPISSSAPPHVIDFSADKRGKVRPVSSVSKSKFEVENIGEWVACSVGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKQKIEVISTAIPTSVVPLSSVVTDPVPLLTSSSSFRGDSWSAIPADNRNNTTTTTNANANNNNKSTDINVSLSGGILGPPCFPTFTGFLSLYNSIRGLDLPLRPMWCHVLMY 387
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0596 387 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Lele52g0596 387 MobiDBLite consensus disorder prediction 38 62 - -
Lele52g0596 387 MobiDBLite consensus disorder prediction 20 108 - -
Lele52g0596 387 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Lele52g0596 387 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 330 IPR039605 GO:0003680
Lele52g0596 387 MobiDBLite consensus disorder prediction 315 339 - -
Lele52g0596 387 Gene3D - 151 284 - -
Lele52g0596 387 ProSiteProfiles PPC domain profile profile. 146 285 IPR005175 -
Lele52g0596 387 CDD DUF296 150 241 IPR005175 -
Lele52g0596 387 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 268 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele52g0596 Lele-ChrLele52 3726539 3729988 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0596 5 348 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.951 9.16e-124 360