Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0578 ATGTTTGTGCAAGACGACCAAGAATACGGAAGTTTGGGCAAGGAGAGGGATTCACCGGTTCAATTCCCGAGGACATCACTTTTAACATTGTTGCTTTCCATTTCTTGTCTGCTTGTCTTTCCTTGTCTTTCTTTGACCGGTCTTCTCCTTTCTCTGTCTGGTTTAATTGGTTGGATCGGCCAAGTTGTACAGGTTCAAATATCTGTGAGTATGAATGCGTTCTCACACGTTCCTCCAGGCTTTCGGTTCCACCCCACAGATGAAGAACTGGTTGATTATTACCTAAGAAAAAAGAGAGACTCCAAAAGGATTGACCTAGATGTTATTAAAGACGTGGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAACTATGCAAAATAGGAGCGGAAGAACAAAACGAGTGGTATTTCTTCAGCCACAAAGACAAGAAGTACCCAACTGGAACTCGCACGAATAGAGCCACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGACAAGGCAATCTACCGTAGGCATTGCCTCATTGGGATGCGAAAGACTCTTGTTTATTACAAGGGACGAGCCCCAAACGGACAGAAATCTGACTGGATAATGCATGAGTACCGACTTGAAACTAATGAAAATGGAACTCCTCAGGAAGAAGGTTGGGTTGTATGTCGAGTGTTCAAGAAGAAAATGACCAGCGTGCGGAGAGTGGGGGAGTATGAGTCACCATGCTGGTTTGAGGACCAAGTCTCGTTGATGCAAGAGCTTGAATCCGCAAGACCAATTTCTCATCAACCTTATGCATCTAATTACCACCACCACCATCAGTACTACGTACCTTGCAAGCAGGAACTTCATCAATTGCAATATAACGTAACCGGCCATCCCCACGAAGTTCTCCTTCAGCTTCCCCAACTTGAGAGCCCCAAAGTTCCTCTCTCAGCCGCAAGTTTGAGCTGCAACAATTCAACGGTCCCTTATGCCTATGACAGCAACAATAATAATGGAAGTAGCTTGCAGCAGTCACCCAATTCACTCGCTCAGGAAGACAACATTCATTGTGGAAACAATAATGATCAAGTGACTGATTGGCGAGTTCTTGATAAATTTGTGGCTTCTCAACTCAGCAGTCACCAGCAAGAAGTTTCCAAGGAAGCCACCTATTCCAATGCAGCAGTGCTCCATGTGGATGAAGCTGCCACTAAAAGGACAGAGATTGCGCAGCAGGAATATGCCTCCACATCCACCTCCAGTTGCCAGATTGACCTGTGGAACTGA 1269 0.4523 MFVQDDQEYGSLGKERDSPVQFPRTSLLTLLLSISCLLVFPCLSLTGLLLSLSGLIGWIGQVVQVQISVSMNAFSHVPPGFRFHPTDEELVDYYLRKKRDSKRIDLDVIKDVDLYKIEPWDLQELCKIGAEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYRRHCLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKKMTSVRRVGEYESPCWFEDQVSLMQELESARPISHQPYASNYHHHHQYYVPCKQELHQLQYNVTGHPHEVLLQLPQLESPKVPLSAASLSCNNSTVPYAYDSNNNNGSSLQQSPNSLAQEDNIHCGNNNDQVTDWRVLDKFVASQLSSHQQEVSKEATYSNAAVLHVDEAATKRTEIAQQEYASTSTSSCQIDLWN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0578 422 FunFam NAC domain-containing protein 86 230 - -
Lele52g0578 422 Pfam No apical meristem (NAM) protein 78 205 IPR003441 GO:0003677|GO:0006355
Lele52g0578 422 ProSiteProfiles NAC domain profile. 77 226 IPR003441 GO:0003677|GO:0006355
Lele52g0578 422 SUPERFAMILY NAC domain 72 226 IPR036093 GO:0003677|GO:0006355
Lele52g0578 422 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 76 341 - -
Lele52g0578 422 Gene3D NAC domain 86 230 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0578 Lele-ChrLele52 3616426 3621928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0578 71 421 NAC Transcription Factor Family AT1G12260 56.233 6.72e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele52g0578 NAM 7.4e-37 No_clan