Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0577 ATGTCATCATCCTCTTCTACTGCCTTATCGCTGGACCACCTCCCTCCTGCCGAGCAGCTTTGTTATGTCCACTGCAACATTTGTGACACTGTCCTTGCTGAGGAGATACCAAACCCATCCCCAAATTTTATAATCAGTCAGACCAACACTTCCAATAACTTTTCTTTGCCTTCAAGGACAACAGCTGATGAGCTCCCACGCCCACCTCTCATCATCAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCCTACAACCGATTCATTAAGGAGGAGATCCAACGCATTAAGTCTATCAATCCCGACATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAACTGGGCCCACTTCCCTCACATTCACTTTGGCCTCATGCCTGATCAGACCATGAAGAAGACAAATGTGCGCCAGCAGGAAGGAGACGACGTTCGCATGAAAGATGGGTTTTTTACTTCGGCAAATGTTGGTGTTTCTCCCTACTAG 492 0.4878 MSSSSSTALSLDHLPPAEQLCYVHCNICDTVLAEEIPNPSPNFIISQTNTSNNFSLPSRTTADELPRPPLIINRPPEKRQRVPSAYNRFIKEEIQRIKSINPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVRQQEGDDVRMKDGFFTSANVGVSPY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0577 163 Pfam YABBY protein 55 127 IPR006780 GO:0007275
Lele52g0577 163 Gene3D High mobility group box domain 72 143 IPR036910 -
Lele52g0577 163 FunFam Axial regulator YABBY 72 143 - -
Lele52g0577 163 SUPERFAMILY HMG-box 71 120 IPR036910 -
Lele52g0577 163 PANTHER PROTEIN YABBY 6-RELATED 1 39 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0577 Lele-ChrLele52 3606465 3608737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0577 64 163 C2C2-YABBY Transcription Factor Family AT2G45190 75.000 1.17e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele52g0577 YABBY 1.7e-38 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0972 53 19264716 19267112 Lele52g0577 52 3606465 3608737 CCT
Lele54g0951 54 15898992 15902440 Lele52g0577 52 3606465 3608737 CCT
Lele56g0486 56 3586911 3590271 Lele52g0577 52 3606465 3608737 CCT
Lele52g0577 52 3606465 3608737 Lele52g0577 52 3606465 3608737 ECH
Lele49g0548 49 3310418 3312677 Lele52g0577 52 3606465 3608737 hybridization
Lele50g0579 50 3521317 3523590 Lele52g0577 52 3606465 3608737 hybridization