Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0558 ATGGTCGAGGAAACGCTCCGTTTGTTGAGAGCTGCTTTTATTATTTGGGCATATGCTCTGTTTAAGATGGGGTGTGATTTTTCCAAGTTCTCAGCATGCTGCTCGGGTACAGAGCAAAGTGGTCCAGTTCCTGGAGCAAACATTGATGAAAATGAAGAGAATCATGAGGCCACTGATGTGCCACCATTTCAAGAATATACGATTGATCAGCTTAGGAAGGCTACTTCTGGATTTGCTGTCGAGAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTAGTTTATAAAGGGAAACTAGAAAATCAAACTCGAATTGCTGTCAAACGGTTCAATAGATCAGCCTGGCCTGATGCTCGACAATTTTCAGAAGAAGCCAGGGCTGTTGGACATCTAAGGAACGAAAGATTGGCAAATCTACTTGGATGTTGCAGTGATGGTGATGAGAGGTTACTTGTTGCAGAATATATGCCTAATGATACTTTGGCTAAGCACTTGTTCCACTGGGAAACTCAGCCCATGAAATGGGCAATGAGACTGAGGGTTGCTTTATACCTTGCCCAAGCGCTAGAATATTGTACTAGCAAAGGACGTGCACTATATCATGATCTAAATGCTTATAGAGTACTTTTTGATGATGAAGGAAATCCTAGGCTCTCATGCTTTGGTTTGATGAAAAACAGTCGGGATGGTAAAAGTTATAGTACAAACCTGGCCTTTACCCCGCCTGAGTATTTAAGGACAGGTAGAGTTACTCCTGAAAGTGTAACATATAGTTTTGGAACCCTTTTGCTCGACCTTCTCAGTGGCAAACATATTCCTCCAAGCCATGCACTGGACCTGATTCGTGACAGGAACCTTCAAATGCTGACAGATTCTTGTTTAGAAGGACAATTTTCAAATGATGAGGGGACTGAATTAGTGCGCTTAGCCTCACGATGTTTACAATCAGAACCACGGGAGCGTCCTTATCCAAAGTCATTGGTTTCTGCTTTAATACCTCTACAGAAGGATTCTGAGGTTCCTTCTCATGTTTTGATGGATATACCACATGGCCCAAATGCTTTACCCCTTTCACCATTTGGTGAGGCATGTCTAAGAATGGATTTGACTGCCATCCATGAGGTCCTTGAAAAACTTGGGTACAAAGATGATGAGGGTGCTGCTACTGAGCTTTCATTCCAAATGTGGACCAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAGGGTGATTCTGCTTTTCGTCATAAAGACTTCAAAGCTACAATTGACAGCTATACTCAGTTCATTGATGTTGGAACTATGGTTTCGCCGACTGTTCATGCACGCCGCAGTCTGTCTTATCTCATGAACAACATGCCAGAAGAAGCACTGAAGGATGCAATGCAAGCACAAATAGTTTCTCCTGTTTGGTATATGGCTTCCTACTTGCAAGCTGTGTCACTTCTTGCATTGGGCAGGGAAAATGAGGCCCAGGCGGCACTTAGAGAGGCTTCTTCACTTGAAAGTAAAAAGAACACAAATTAA 1530 0.4275 MVEETLRLLRAAFIIWAYALFKMGCDFSKFSACCSGTEQSGPVPGANIDENEENHEATDVPPFQEYTIDQLRKATSGFAVENIVSEHGEKAPNVVYKGKLENQTRIAVKRFNRSAWPDARQFSEEARAVGHLRNERLANLLGCCSDGDERLLVAEYMPNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRVLFDDEGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSNDEGTELVRLASRCLQSEPRERPYPKSLVSALIPLQKDSEVPSHVLMDIPHGPNALPLSPFGEACLRMDLTAIHEVLEKLGYKDDEGAATELSFQMWTNQMQETLNSKKKGDSAFRHKDFKATIDSYTQFIDVGTMVSPTVHARRSLSYLMNNMPEEALKDAMQAQIVSPVWYMASYLQAVSLLALGRENEAQAALREASSLESKKNTN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0558 509 Gene3D Transferase(Phosphotransferase) domain 1 158 349 - -
Lele52g0558 509 FunFam probable serine/threonine-protein kinase At4g35230 402 509 - -
Lele52g0558 509 SUPERFAMILY Protein kinase-like (PK-like) 54 344 IPR011009 -
Lele52g0558 509 FunFam probable serine/threonine-protein kinase At5g41260 158 349 - -
Lele52g0558 509 FunFam probable serine/threonine-protein kinase At4g35230 53 156 - -
Lele52g0558 509 Gene3D Phosphorylase Kinase; domain 1 51 156 - -
Lele52g0558 509 Gene3D Tetratricopeptide repeat domain 398 509 IPR011990 GO:0005515
Lele52g0558 509 Pfam Protein tyrosine and serine/threonine kinase 94 331 IPR001245 GO:0004672|GO:0006468
Lele52g0558 509 SUPERFAMILY TPR-like 408 504 IPR011990 GO:0005515
Lele52g0558 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 49 507 IPR045845 GO:0004672|GO:0009742
Lele52g0558 509 ProSiteProfiles Protein kinase domain profile. 81 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0558 Lele-ChrLele52 3432119 3439086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0558 51 332 Glycoside Hydrolase AT3G07070 34.516 6.79e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lele52g0558 PK_Tyr_Ser-Thr 4.3e-26 CL0016