Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0547 ATGGAGAGGCACAAATGCAAGCTTTGCTCTCGAACGTTCGCCAATGGCAGAGCATTAGGTGGTCACATGAAAGCTCACTTGGCCTCTCTTCCTCTTCCTCCCAAGCCCCAATCACTGATCACTCCTTCGGCACCTTCCTTCTCTTATTCCTCTTCCGACGACGACGACGAAGAACAAGTTGAAGTAGCGCCTGCTTACAACAGAGAATCCGACGACAAGGCTTTGAGTTATGGTTTGAGAGAGAATCCAAGGAAAAATTTCAGGTTCGCAGATCCTGAGTTCTCTTTTGCGGTGGATGCTGGCTCCGTCGTCCAAGATAGAGAAAGCGAGACGGAGTCAAAGAATCCGACTCGCCGGCGATCCAAGCGAACCAGAAAATCCAGCGTCGGAGCTAGTCAGAAATTTGAAGTGAACAAGGCCAAGTCAAATTTGACGGAGTCACCGACGGAGCCAGAACCGGTGAGCTCGGTTTCAGATACTTCACCGGATGAACATGTTGCCATGTGCCTCATGATGCTTTCGAGAGACAGATGGATGAGAAACGTCGTGGAACAAGATCAAGTGGTGGAGAGATCGAACGGAACGGAAGAGATCAAGTTGAAGAGGAAGCATCAATCTGATAACACTAAGAAAACTTCTCGATCTTCTCGAGCACTGAACACTCATCACAATAGCACCTTCTTCCCTGAAGAAGCAGAGACCAAAATTGCAGGTAACAATAAAATTTTCCAATGCCCATTTTGTTACAAAGTCTTCGGGTCGGGGCAAGCACTCGGTGGCCACAAGAGATCCCACCTCCTACCATCTTCATCGTCAACCGCTATCCACTCTGCTAAATGTTCCATAGATCTCAACCTGCCAGCTCCGGCGGAAGAAGATGAACTAAGCGTTGTTTCTGATGCGTAA 906 0.4845 MERHKCKLCSRTFANGRALGGHMKAHLASLPLPPKPQSLITPSAPSFSYSSSDDDDEEQVEVAPAYNRESDDKALSYGLRENPRKNFRFADPEFSFAVDAGSVVQDRESETESKNPTRRRSKRTRKSSVGASQKFEVNKAKSNLTESPTEPEPVSSVSDTSPDEHVAMCLMMLSRDRWMRNVVEQDQVVERSNGTEEIKLKRKHQSDNTKKTSRSSRALNTHHNSTFFPEEAETKIAGNNKIFQCPFCYKVFGSGQALGGHKRSHLLPSSSSTAIHSAKCSIDLNLPAPAEEDELSVVSDA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0547 301 Pfam C2H2-type zinc finger 243 265 - -
Lele52g0547 301 Pfam C2H2-type zinc finger 3 28 - -
Lele52g0547 301 SMART c2h2final6 243 265 IPR013087 -
Lele52g0547 301 SMART c2h2final6 4 26 IPR013087 -
Lele52g0547 301 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 301 IPR044303 GO:0006355
Lele52g0547 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele52g0547 301 MobiDBLite consensus disorder prediction 193 225 - -
Lele52g0547 301 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
Lele52g0547 301 MobiDBLite consensus disorder prediction 33 74 - -
Lele52g0547 301 SUPERFAMILY beta-beta-alpha zinc fingers 3 265 IPR036236 -
Lele52g0547 301 MobiDBLite consensus disorder prediction 101 163 - -
Lele52g0547 301 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele52g0547 301 MobiDBLite consensus disorder prediction 128 162 - -
Lele52g0547 301 Gene3D Classic Zinc Finger 174 272 - -
Lele52g0547 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 265 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0547 Lele-ChrLele52 3351258 3352163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0547 2 296 C2H2 Transcription Factor Family AT1G02030 36.957 1.71e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele52g0547 zf-C2H2_6 1.7e-07 CL0361