Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0533 ATGCTACGGGTCCTTAATCGAATAGAGCTGAGTATCTTGCCGTCGGTCTTCAACGAAGCTGGCATAAGAACTTTGGGTTTTGATTGTAAGAAGCCAGCATTAGAGATTGTGTTAGTTTCGTTCCCGAAAATGGAAGGTGTTGATTACTTGGCCCCCGAGAGGAACAAAGCTCAATTCGATGTCGAAGAGATGAAAATCGTCTGGGCTGGTTCTCGTGAAGCTTTTGAAGTTTCTGATCGAATGGCTCGCCTTGTTGCCAGCGATCCGGTATTCAGAAAGGATAATAGGCCCATGCTTGGCAGAAAAGAATTATTTAAGAACACTTTGAGGAAAGCAGCTCATGCATGGAAAAGGATAATTGAGCTTCGCCTCAATGAAGAGGAAGCTTCTAGACTTAGATTCTATGTGGATGAACCTGCATTTACGGATCTTCATTGGGGAATGTTTATCCCAGCTATAAAGGGACAAGGAACTGAGGAGCAGCAGCAGAAATGGTTGCCTTTGGCTTATAAGATGCAAATAATTGGTTGCTATGCCCAAACTGAACTTGGTCATGGATCCAATGTTCAAGGGCTCGAAACCACTGCAACCTTTGATCCTCAAACAGACGAGTTTGTGATTAATAGCCCCACACTGACTTCCAGCAAATGGTGGCCTGGTGGATTGGGTAAAGTTTCCACACATGCTGTTGTCTATGCCCGTCTAATCACCGATGGTCAAGACCAAGGAGTGCATGGTTTCATTGTCCAGCTGCGGAGCTTGGATGATCACCTGCCTCTTCCAGGCATAACTGTTGGTGATATTGGAATGAAATTTGGAAATGGGGCATATAACTCTATGGATAATGGGGTTCTAAGATTTGATAACGTAAGAATTCCAAGGAATCAAATGTTGATGAGGGTTTTACAGGTTACAAGAGAAGGAAAATGTGTCCAATCTAATGTTCCACGGCAATTAGTTTATGGTACGATGGTATTTGTAAGACAATCAATTGTGTCTGATGCATCCAGTGCTTTGTCACGAGCAGTTTGCATTGCTACAAGATATAGTGCTGTTCGAAGACAGTTTGGCTCACATAATGGAGGTCTTGAAACACAGGTGATTGATTACAAAACTCAGCAAGCTAGGCTGTTCCCCTTGGTGGCTTCTGCTTATGCTTTCAGATTCGTTGGTGAATGGTTGAAATGGCTATATATGGATGTGACCCGAAGATTGCAGGCCAATGATTTTTCAACATTGCCTGAGGCTCATGCATGCACTGCAGGATTGAAGTCCTTGACTACATCAGCTACTGCAGATGGGATTGAAGAATGCCGAAAACTATGTGGTGGTCATGGTTACCTTTGTAGCAGTGGTCTTCCCGAGTTATTTGCAGTATATGTTCCTACCTGCACTTATGAAGGAGACAATGTTGTGCTGCTTTTACAGGTAGCAAGGCATCTCATGAAGACTATCTCTCAGCTGGGCTCCGGGAAGAAGCCTGTTGGTACCACTACTTATATGGGTCGAGTGGAACATCTGATGCGATGTCATTCTGATGTTCAGAAAGCTGAGGATTGGTTGAACGCTAATGTAGTGCTGGAAGCATTTGAAGCTAGGGCTGCTCGGATGTCTGTTGGCTGCGCTCAAGCTCTTAGCAAGTTTACCAACCCAGAAGAAGGTTTTCAACAACTGTCAGCTGATTTAGTTGAGGCAGCAGTTGCTCACTGCCAGTTGATTGTTGTTTCCAAATTTTTGGAGAAGTTGCAGCAAGATATACCTGGAAAGGGAGTGAAACAGCAATTACAAAATCTCTGTAGCATATATGCTTTGTTTCTTGTTCATAAGAATCTGGGCGATTTTCTCTCCACTGGCTGCATCACTGCCAAACAGGGTTCACTCGCCAACGATCAGCTGAGGTCCTTGTATTCCCAGGTTCGCCCTAATGCAATTGCGCTTGTGGATGCATTCAATTACACCGATCAATACCTCAGTTCGGCTCTGGGCCTTTACGACGGAAATGTGTATCCAACGCTGTACGAGGAGGCATGGAAGGATCCTCTGAATGATTCGGTTGTGCCAGACGGTTACCAGGAATATGTTCGACCAATGCTGAAGCAACAACTCCGGAATGCTAGACTCTAA 2124 0.4459 MLRVLNRIELSILPSVFNEAGIRTLGFDCKKPALEIVLVSFPKMEGVDYLAPERNKAQFDVEEMKIVWAGSREAFEVSDRMARLVASDPVFRKDNRPMLGRKELFKNTLRKAAHAWKRIIELRLNEEEASRLRFYVDEPAFTDLHWGMFIPAIKGQGTEEQQQKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVINSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDQGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNGAYNSMDNGVLRFDNVRIPRNQMLMRVLQVTREGKCVQSNVPRQLVYGTMVFVRQSIVSDASSALSRAVCIATRYSAVRRQFGSHNGGLETQVIDYKTQQARLFPLVASAYAFRFVGEWLKWLYMDVTRRLQANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPTCTYEGDNVVLLLQVARHLMKTISQLGSGKKPVGTTTYMGRVEHLMRCHSDVQKAEDWLNANVVLEAFEARAARMSVGCAQALSKFTNPEEGFQQLSADLVEAAVAHCQLIVVSKFLEKLQQDIPGKGVKQQLQNLCSIYALFLVHKNLGDFLSTGCITAKQGSLANDQLRSLYSQVRPNAIALVDAFNYTDQYLSSALGLYDGNVYPTLYEEAWKDPLNDSVVPDGYQEYVRPMLKQQLRNARL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0533 707 Pfam Acyl-coenzyme A oxidase N-terminal 60 175 IPR029320 -
Lele52g0533 707 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 51 302 IPR009100 GO:0016627
Lele52g0533 707 Pfam Acyl-CoA dehydrogenase, middle domain 177 290 IPR006091 GO:0016627
Lele52g0533 707 Gene3D - 176 311 IPR046373 GO:0016627
Lele52g0533 707 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 507 700 IPR036250 GO:0016627
Lele52g0533 707 FunFam Acyl-coenzyme A oxidase 60 175 - -
Lele52g0533 707 Gene3D - 60 175 IPR037069 GO:0016627|GO:0050660
Lele52g0533 707 PANTHER ELECTRON TRANSPORT OXIDOREDUCTASE 46 698 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Lele52g0533 707 PIRSF Acyl-CoA_oxidase 35 702 IPR012258 GO:0003997|GO:0005777|GO:0006631|GO:0071949
Lele52g0533 707 Gene3D - 524 651 - -
Lele52g0533 707 Gene3D - 319 492 - -
Lele52g0533 707 Pfam Acyl-CoA oxidase 523 699 IPR002655 GO:0003997|GO:0005777|GO:0006635
Lele52g0533 707 FunFam Acyl-coenzyme A oxidase 176 312 - -
Lele52g0533 707 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 319 502 IPR036250 GO:0016627
Lele52g0533 707 FunFam Acyl-coenzyme A oxidase 319 492 - -
Lele52g0533 707 FunFam Acyl-coenzyme A oxidase 523 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0533 Lele-ChrLele52 3263481 3270443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0533 44 707 Acyl Lipid Metabolism Gene Families AT4G16760 80.120 0.0 1120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0533 52 3263481 3270443 Lele53g0327 53 2838818 2839543 CCT
Lele52g0533 52 3263481 3270443 Lele54g0328 54 2848210 2849668 CCT
Lele52g0533 52 3263481 3270443 Lele55g1158 55 18142148 18142873 CCT
Lele52g0533 52 3263481 3270443 Lele56g1107 56 14548948 14550740 CCT
Lele49g0502 49 2997308 3004896 Lele52g0533 52 3263481 3270443 hybridization
Lele50g0533 50 3199740 3206259 Lele52g0533 52 3263481 3270443 hybridization