Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0529 ATGGGTGAAAAAGAGGACCTGGGTTTGAGTCTTAGCTTGAGCTTCCCTTGCAATCCTCCTAATCCTCTGCAACTTAATCTCCTTCCTTCTTCTACTTCTCCTGCCGCCTCCAATCTTCACAGACCCTCTTGGAACGATGCCTTTACCTCCTCAGATCGAGATTCTGAATCATGCAGAGGCGAAGGTCGATCTTTCCTACGAGGAATCGACGTGAATCGATTGCCTTCCGGCGTGGACTGCGAAGAGGAGGCCGGTGTTTCGTCTCCGAACAGCACGATCTCGAGCGTGAGTGGCAAGAGAAGTGAGAGGGAACCCAACGGAGAAGACCATGATGCTGACAGAGACTGTTCTCGAGGAATCAGTGATGAAGAAGACGGCGAAACATCCCGGAAAAAGCTCAGGCTTTCAAAAGATCAATCCGCTATTCTCGAGGAAAGCTTTAAAGAACACAGTACCCTCAATCCCAAGCAAAAGTTGGCACTGGCAAAGCAGCTGGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACTGAGGTAGACTGTGAGTTCTTGAAGAGATGCTGCGAGAATCTTACGGATGAGAACAGACGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTGAAACTCTCCCCACAACTGTACATGCAAATGACCCCACCCACGACTCTCACCATGTGCCCGTCATGTGAGCGAGTCGCCGTGCCGCCTTACGCCGCCGCTGCCGCCGTAGGCAGCAATCGCCCCCACACGATGGCCCAAGCTCACGCTCGGCCCTTCCCCGTCGGCACATGGGCCGCTGCCGCAGCTCCAATATCTCACCGGCCCTTCGATGTTCTGCACCCCAGATCGAGATAG 891 0.5365 MGEKEDLGLSLSLSFPCNPPNPLQLNLLPSSTSPAASNLHRPSWNDAFTSSDRDSESCRGEGRSFLRGIDVNRLPSGVDCEEEAGVSSPNSTISSVSGKRSEREPNGEDHDADRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHSTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAAAAAVGSNRPHTMAQAHARPFPVGTWAAAAAPISHRPFDVLHPRSR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0529 296 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Lele52g0529 296 SUPERFAMILY Homeodomain-like 119 187 IPR009057 -
Lele52g0529 296 SMART HOX_1 128 190 IPR001356 GO:0003677
Lele52g0529 296 MobiDBLite consensus disorder prediction 1 62 - -
Lele52g0529 296 MobiDBLite consensus disorder prediction 14 51 - -
Lele52g0529 296 MobiDBLite consensus disorder prediction 80 135 - -
Lele52g0529 296 PRINTS Lambda-repressor HTH signature 157 166 IPR000047 GO:0003677
Lele52g0529 296 PRINTS Lambda-repressor HTH signature 166 182 IPR000047 GO:0003677
Lele52g0529 296 FunFam Homeobox-leucine zipper protein 18 114 191 - -
Lele52g0529 296 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Lele52g0529 296 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Lele52g0529 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 22 262 - -
Lele52g0529 296 MobiDBLite consensus disorder prediction 101 135 - -
Lele52g0529 296 Coils Coil 185 222 - -
Lele52g0529 296 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Lele52g0529 296 Pfam HD-ZIP protein N terminus 1 104 IPR006712 GO:0005634
Lele52g0529 296 MobiDBLite consensus disorder prediction 85 100 - -
Lele52g0529 296 CDD homeodomain 130 187 IPR001356 GO:0003677
Lele52g0529 296 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Lele52g0529 296 Gene3D - 134 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0529 Lele-ChrLele52 3228039 3229456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0529 1 295 Homeobox Transcription Factor Family AT4G16780 63.696 1.26e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele52g0529 HD-ZIP_N 1.7e-35 No_clan