Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0509 ATGGGAAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACCCCACTTTGGCGTAATGGCCCACCAGAGAAACCAGTATTATGCAATGCATGCGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCATTACATGCTCGGACAGAAACTGATGATTGTGAGGACCAAAGGTTTTCAAGGGTAAATAAGAACAAAGAAGTGAAATTGTCTAAACGAAAGCTGAACGAAGATAATTTATTTACTGGAGTGGCTGGCCTGGATTACAACCAAGGGTACCGGAAGGCTGCAGATGAAGATACGAGCAATAGATCAAGTTCTGGATCAGCTATCTCTAACTCAGAGAGTTGTGCTCAATTTGGTGGCACTGATGCTAGTGATTTGACAGGGCCTGCTCAGTCAATTGTCTGGGATGCCATGGTGCCTTCAAAGAAGAGGACATGTGTGGGTCGTCCAAAGCAATCTTCTGTTGAGAAGCTTACAAAAGATCTGTACACTATTCTTCATGAACAACAGTCTTATTTTTCCGCATCCTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGTCATGGAAGCGTTCTTATTAGGCACCCAAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAACAAACAGTACCCAACCAGTGAGGCATATTCATATTATGGTACCGCTCATGTGCATAATGGTTATAGCAGTGTGAACTTTCCATCTCAGGGGGTTCAAAAGATCAGGAGCTCTGCCGGCCAAGAAATGCTGAAAGAACAACTTAAGAGGGACAAGACTCAACATGATAAGGTTCAAATCCTTGGAAATAAGTCACCACTGTGCTCAGTAGATTTGAATGATGTCATTAACTATGATGAATTTATGAAGACTTTGACAAATGAAGAGCAGCAACAATTACTCCAGTGTCTCACTGCGGTTGATACTACAAAACTTCCTGATAGCCTGAAAAGCATGTTTAGTAGCTCTCAATTCAAGGAGAACTTGAATTATTTTCAGCAGCTTCTCGCAGAAGGTGTCTTTGATATCTCCTTATCAGGGACAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTGCATTGTCCAATCTGTCAAAATCAAAATGGGTGGAACATTATACCTTGCTTAAGAAACATAAGAACAGAGCTAGAAAATCTGTTGCTTCGGGTTCTTCTGGCACTGCATCTAATAATGCTGCAAATGTCAAGAGATATCATGACAGCCAAAGTAAAAATTTATCAGAATTGAAGACCACAATGAGGAGTCCTAAAAGGGTGATGATGAAGGTTGGCTGTGAGGGCAAGGAAGCTGAAGAATATGGGTCTTGTTTCAGTCCAAAAAGCCTATTTGCTTTGCCTTCTGATGGTGAGGCCCTCATGCTGGACTCTTTCACTTTTGTTGAAGAGAGTGGTGATCAGGACCTGCTGCTCGATGTGCCATCCAATGGTTCTTTTCCCGAGGCAGAGCTCCTGCACCCAACTTTAAGCTTTGGTGCTCAAGCCAGCACCAGTAGTAGCTCAATATACCCTCATATTCTCCATCCCTCATAA 1608 0.4285 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDCEDQRFSRVNKNKEVKLSKRKLNEDNLFTGVAGLDYNQGYRKAADEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDAMVPSKKRTCVGRPKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQYPTSEAYSYYGTAHVHNGYSSVNFPSQGVQKIRSSAGQEMLKEQLKRDKTQHDKVQILGNKSPLCSVDLNDVINYDEFMKTLTNEEQQQLLQCLTAVDTTKLPDSLKSMFSSSQFKENLNYFQQLLAEGVFDISLSGTKPEDCKTLKRLALSNLSKSKWVEHYTLLKKHKNRARKSVASGSSGTASNNAANVKRYHDSQSKNLSELKTTMRSPKRVMMKVGCEGKEAEEYGSCFSPKSLFALPSDGEALMLDSFTFVEESGDQDLLLDVPSNGSFPEAELLHPTLSFGAQASTSSSSIYPHILHPS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0509 535 MobiDBLite consensus disorder prediction 405 438 - -
Lele52g0509 535 MobiDBLite consensus disorder prediction 400 439 - -
Lele52g0509 535 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 289 401 IPR044867 -
Lele52g0509 535 MobiDBLite consensus disorder prediction 98 118 - -
Lele52g0509 535 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Lele52g0509 535 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lele52g0509 535 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lele52g0509 535 PANTHER OSJNBB0038F03.10 PROTEIN 1 529 IPR044589 -
Lele52g0509 535 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lele52g0509 535 Pfam Asx homology domain 276 361 IPR028020 -
Lele52g0509 535 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lele52g0509 535 Gene3D - 282 382 IPR038108 -
Lele52g0509 535 Gene3D - 3 81 IPR013088 GO:0006355|GO:0008270
Lele52g0509 535 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0509 Lele-ChrLele52 3092844 3097837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0509 1 511 C2C2-Gata Transcription Factor Family AT4G17570 53.802 1.46e-164 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele52g0509 ASXH 4.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0313 53 2624880 2626457 Lele52g0509 52 3092844 3097837 CCT
Lele54g0309 54 2632903 2634486 Lele52g0509 52 3092844 3097837 CCT
Lele55g1177 55 18403073 18404653 Lele52g0509 52 3092844 3097837 CCT
Lele56g1127 56 14763932 14765512 Lele52g0509 52 3092844 3097837 CCT
Lele49g0476 49 2841410 2843437 Lele52g0509 52 3092844 3097837 hybridization
Lele50g0508 50 3020865 3025865 Lele52g0509 52 3092844 3097837 hybridization