Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0508 ATGTATGCCATATGCGTATCGTATTGGATATGTATATACGGAGATGAGGACATTGCACTTCCTGATGGAAGCAATCAGCATCAAGCATTAACAATTTCCCCAACAGTAGTTGAAGAAGAAAGCAAAGATGCTATACAGGTTGAGGGAACACTAGGAAAGGAGATAGTAGTTTACTCAGGAGCTCAAAGCCTTGTGACAGAACATCCGTGTACCTCTGCTTGGTATCATAAGTCAAAAGGAGATTTCAATGAATTGCAGGCTCCATCTAGCAGGATGGTCGTACTAGGCCTGATGTCCGCATCGACATGTCCCTGGAGGAACAGTGTAGGTTTTCCCAAATCTAGTAAGGTTGGTGGTAAAAATGAAAGAAGGGGAAAGAAAATTGACTTTTTTGAACGCTTTGAGAGGTCCAAAGTTGCTACGAAGTCTAAAGACTCACCAAATTGTTCTGGGAAGAAGCCTGTAATAAAGAAAAAAGGAAGCTGTGCTGCTGAAGAGACAAGTGTTGTCCCAAGATCCCAAGGTTTTGATGTTCATGTTCCTCCTTTTGGTCATGGAAATCTAACTGGTAATGACAAAGAATCAAATGTCACTCGAAATAAAGTGAGGGAGACATTGAGCCTTTTCCAAGCCGTTACTAGAAAGCTATTGCAGGAGGAAGAAGCAAAGCCAAAAGACAAAGGGAACACTAATAGGAGGGGGAAGCCGATCTTGGGACTTATCCCTGGGGTTGAAGTTGGTGATGAATTTCAGTACTGGGTGGAGCTTAATATTGTTGGCCTTCATCGCCAGTCTCAGGGAGGCATAGATTATGTCATGCATAATGGTAAGACCGTTGCAACTAGTGTGGTTTCATCTAAGGGCTATGCTGATGAGTTGGGCAGTTCAGATGTCTTATCTTATACAGGGCAGGGAGGAAGTATGTTAAAGAATGGTAAAGAACCTGAAGACCAGAAGCTTGAGAGGGGCAATATTGCTTTGAAGAATAGTATTACAGAAAAGAATCCTGTCAGGGTAATACGTGGCTGTGAATCAACAGATGGAAAAAGTAGGAGAAATGTTTATGATGGGCTATATGAAGTTGAGGCTTATTGGCAGGAAATGGGACCACATGGTAAGTTGATTTTTAGGTTTCGGATGCGGAGAATCCCAGGTCAACCAGAACTTGCTTGGAAATAA 1179 0.4241 MYAICVSYWICIYGDEDIALPDGSNQHQALTISPTVVEEESKDAIQVEGTLGKEIVVYSGAQSLVTEHPCTSAWYHKSKGDFNELQAPSSRMVVLGLMSASTCPWRNSVGFPKSSKVGGKNERRGKKIDFFERFERSKVATKSKDSPNCSGKKPVIKKKGSCAAEETSVVPRSQGFDVHVPPFGHGNLTGNDKESNVTRNKVRETLSLFQAVTRKLLQEEEAKPKDKGNTNRRGKPILGLIPGVEVGDEFQYWVELNIVGLHRQSQGGIDYVMHNGKTVATSVVSSKGYADELGSSDVLSYTGQGGSMLKNGKEPEDQKLERGNIALKNSITEKNPVRVIRGCESTDGKSRRNVYDGLYEVEAYWQEMGPHGKLIFRFRMRRIPGQPELAWK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0508 392 ProSiteProfiles YDG domain profile. 239 382 IPR003105 -
Lele52g0508 392 Pfam SAD/SRA domain 238 386 IPR003105 -
Lele52g0508 392 Coils Coil 392 392 - -
Lele52g0508 392 SUPERFAMILY PUA domain-like 233 391 IPR015947 -
Lele52g0508 392 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 126 388 - -
Lele52g0508 392 SMART G9a_1 234 386 IPR003105 -
Lele52g0508 392 Gene3D - 222 392 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0508 Lele-ChrLele52 3087475 3089689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0508 192 387 Su(var)3-9 homologs AT5G04940 40.826 3.56e-40 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0474 49 2827144 2830966 Lele52g0508 52 3087475 3089689 hybridization
Lele50g0507 50 3016387 3017190 Lele52g0508 52 3087475 3089689 hybridization