Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0506 ATGGAGCTTCATTCTAAATACCAGATGGTCCTTGTTTGTGTGTTGCTCTTGCCTGCACTATGCCTTTCCCAATTCACAGACTCCAGAGCCACCTACTATAGCACCCCCGATGGCAAAGGAACCCCAACTGGAGCTTGTGGATTTGGCCAGTACGGCAGAACTGAAAACAACGGGATGGTTACCGCCGTGTCTGGACTATGGAGAGGTGGCGCCGGATGCGGTGCTTGCTACCAAGTAAGGTGCAAGGATACAAAATTATGCAGTACCAGCGGGGCAACGGTGGCGACAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTATGAGTCTGAATGGCTTCTTGAAACTGGGAGTGAATTCAAGCGCATCGGAAGAGCTCAGGAAAAAAGGCACCGTTGATATCCAGTACATGAGGGTCCCATGCACATTCGATGGCTCCACCATCAAGATCAAGATCCACGAGAACAGCAGATACCCGGACTACCTTGCTATTGCCGTTATCTACGTGCCCGGATCCAAAGACGTCGTTGCATTTGAGATCTCCAACAACGGAGGGATAGACTGGAAGGCAACGAGGAGAGCGTTTGGGGGAGTGTTTGATATAACAAATGCGCCACGTGGACCATTCAAGGTGAGGGTGCAATTCAGTGGGAGCCAAACTTGGGTCGTGTCTCCCAACAATGTTGTTCCTGTTGCTTGGAAGGTTGGAGCAATTTATGACACAGGAATTCGTGCCTAA 741 0.5034 MELHSKYQMVLVCVLLLPALCLSQFTDSRATYYSTPDGKGTPTGACGFGQYGRTENNGMVTAVSGLWRGGAGCGACYQVRCKDTKLCSTSGATVATTDMGSGDRTDFVMSLNGFLKLGVNSSASEELRKKGTVDIQYMRVPCTFDGSTIKIKIHENSRYPDYLAIAVIYVPGSKDVVAFEISNNGGIDWKATRRAFGGVFDITNAPRGPFKVRVQFSGSQTWVVSPNNVVPVAWKVGAIYDTGIRA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0506 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 242 IPR007117 -
Lele52g0506 246 Gene3D - 144 246 IPR036749 -
Lele52g0506 246 Pfam Lytic transglycolase 66 137 IPR009009 -
Lele52g0506 246 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Lele52g0506 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Lele52g0506 246 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Lele52g0506 246 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Lele52g0506 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Lele52g0506 246 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Lele52g0506 246 PANTHER EXPANSIN-B3 14 245 - -
Lele52g0506 246 SUPERFAMILY PHL pollen allergen 148 241 IPR036749 -
Lele52g0506 246 Gene3D - 19 143 IPR036908 -
Lele52g0506 246 Pfam Expansin C-terminal domain 149 231 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0506 Lele-ChrLele52 3077611 3079226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0506 4 244 Expansin Gene Family AT4G17030 44.534 1.05e-69 213