Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0505 ATGGAGTTTCAGTCTAAATACCAAGTAGTCCTTGTTTGTGTGTTGCTCTTGCCTGCACTATGCCTTTCCCAATTCACAGACTCCAGAGCCACCTTTTACAGTACCTCCGATGGCATGGGAACCCCAACCGGAGCTTGTGGATTTGGCGATTACGGCAGAACTGAGAACTCAGGGATGGCTGCGGGCGTGTCTGGGCTATGGAGAGGTGGCGCCGGATGCGGTGCTTGCTACCAAGTAAGGTGCAAGGATCCAAACTTATGCAGTACGAACGGGGCAACGATAGTGGCAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTATGAGTCTGAATGGTTTCTTAAACCTGGGATTGAACTCAAGTGCTTCGGAAGAGCTCAGGAAACTGGGCACCGTTGACATCCAATACAGGAGGGTCCCATGCACATTCGATGGCTCCACCATCAAGATCAAGATCCACGAGAACAGCAGATATCCAGACTACCTTGCTATTGCCGTTATATACGTGCCTGGATCCAACGACGTCGTTGCCGTTGAGATCTCCAACGATGATGGCGATGATTGGGAGGAAATGAACAGATCATTTGGGGGAGTGTTTGATATAACAAATGCGCCACGTGGACCATTCAAGGTGAGGGTGCAATTCAGTGGGAGCCAAACTTGGGCTGTGTCATCCATGAATGTTATTCCTGCTGATTGGAAGGTTGGAGCTATTTATGATACTGGAATTCGTGCCTAA 741 0.4939 MEFQSKYQVVLVCVLLLPALCLSQFTDSRATFYSTSDGMGTPTGACGFGDYGRTENSGMAAGVSGLWRGGAGCGACYQVRCKDPNLCSTNGATIVATDMGSGDRTDFVMSLNGFLNLGLNSSASEELRKLGTVDIQYRRVPCTFDGSTIKIKIHENSRYPDYLAIAVIYVPGSNDVVAVEISNDDGDDWEEMNRSFGGVFDITNAPRGPFKVRVQFSGSQTWAVSSMNVIPADWKVGAIYDTGIRA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0505 246 SUPERFAMILY PHL pollen allergen 148 241 IPR036749 -
Lele52g0505 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Lele52g0505 246 PRINTS Major pollen allergen Lol pI signature 61 72 IPR005795 GO:0005576|GO:0019953
Lele52g0505 246 PRINTS Major pollen allergen Lol pI signature 152 167 IPR005795 GO:0005576|GO:0019953
Lele52g0505 246 PRINTS Major pollen allergen Lol pI signature 218 235 IPR005795 GO:0005576|GO:0019953
Lele52g0505 246 PRINTS Major pollen allergen Lol pI signature 81 91 IPR005795 GO:0005576|GO:0019953
Lele52g0505 246 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Lele52g0505 246 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Lele52g0505 246 PANTHER EXPANSIN-B3 14 245 - -
Lele52g0505 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 242 IPR007117 -
Lele52g0505 246 Gene3D - 144 246 IPR036749 -
Lele52g0505 246 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Lele52g0505 246 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Lele52g0505 246 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Lele52g0505 246 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Lele52g0505 246 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Lele52g0505 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Lele52g0505 246 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Lele52g0505 246 Pfam Lytic transglycolase 60 137 IPR009009 -
Lele52g0505 246 Gene3D - 19 143 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0505 Lele-ChrLele52 3070471 3071973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0505 14 244 Expansin Gene Family AT4G17030 46.809 3.14e-72 219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0465 49 2797409 2800853 Lele52g0505 52 3070471 3071973 hybridization
Lele50g0504 50 2999266 3000761 Lele52g0505 52 3070471 3071973 hybridization