Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0504 ATGGAACTTCATTCTAAATACCAAATTGCCCTTGTCTGTGCAGTGATGGTGCTCTTACCTGCACTATGTTCCTCCCAAGGCTTTACATCCTCCAGAGCTACCTATTATGGCAGCCCCGATTGCTATGGAACTCCAAGGGGAGCTTGTGGCTATGCCGAATATGGAAGGACCGTGAATGATGGGAGTGTTGCAGGCGTCGCTGGGCTTTGGAAGAACGGCTCTGGGTGTGGTGCTTGCTACCAAGTGAGGTGTAAGAATCCACAAGTGTGCGATGAATACGGGACATACGTAGTGGTGACAGACTACGGTGAAGGAGACAGAACAGATTTCATAATGAGTCCACGTGCGTACTCCAGAATGGGACGGAATCCAGACGCATCGACGGAGCTGTTCAAATATGGCGTCGTAGACGTGGAATACAGGAGGATCCCCTGTAGGTATGGGGGCTACAACGTGGTGTTCAAGGTTAACGAGCACAGCACATACCCTGACTACATCGCCATTCTGGTTCTCTACGTCGCCGGCCAAAACGACATCACGGCGGTGGAGGTGTGGCAGGAGGATTACAAAGAATGGAGGCCCATGAGGAGAGCGTACGGAGTGGTGTTTGATGCAGAGAACCCGCCACGTGGAGATCTGATGTTGAGGTTCCAGGTGAGAGGGCGCGCGGGAGTCTACTGGGTTCAGTCCAAGAATGCTATTCCCAGTGACTGGAAGGCCGGGGCTGATTATGACTCTCAAGTTCAGCTAGATTAG 756 0.5225 MELHSKYQIALVCAVMVLLPALCSSQGFTSSRATYYGSPDCYGTPRGACGYAEYGRTVNDGSVAGVAGLWKNGSGCGACYQVRCKNPQVCDEYGTYVVVTDYGEGDRTDFIMSPRAYSRMGRNPDASTELFKYGVVDVEYRRIPCRYGGYNVVFKVNEHSTYPDYIAILVLYVAGQNDITAVEVWQEDYKEWRPMRRAYGVVFDAENPPRGDLMLRFQVRGRAGVYWVQSKNAIPSDWKAGADYDSQVQLD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0504 251 PANTHER EXPANSIN-B3 15 249 - -
Lele52g0504 251 Pfam Expansin C-terminal domain 152 235 IPR007117 -
Lele52g0504 251 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Lele52g0504 251 PRINTS Major pollen allergen Lol pI signature 155 170 IPR005795 GO:0005576|GO:0019953
Lele52g0504 251 PRINTS Major pollen allergen Lol pI signature 64 75 IPR005795 GO:0005576|GO:0019953
Lele52g0504 251 PRINTS Major pollen allergen Lol pI signature 84 94 IPR005795 GO:0005576|GO:0019953
Lele52g0504 251 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Lele52g0504 251 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Lele52g0504 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Lele52g0504 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Lele52g0504 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Lele52g0504 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lele52g0504 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lele52g0504 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Lele52g0504 251 Gene3D - 19 146 IPR036908 -
Lele52g0504 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Lele52g0504 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Lele52g0504 251 Gene3D - 147 250 IPR036749 -
Lele52g0504 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0504 Lele-ChrLele52 3063576 3064779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0504 4 250 Expansin Gene Family AT4G17030 63.306 5.12e-115 328