Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0501 ATGGCCAATCCATCTTCCTCAGCTCGCTCCTCCAATGCCGGGCAGTTTACCTACTCCGACGGCTCCTACTTCCCCACGCCCTTCCATCTTCAGCAATCTGCTTCCACGACGTCATCTCACTATGCTGCGCCATATGTAGCGGCGTCACCAGCGGTGCCAATTCCTCCTCAAGCGCCTCCCGCTGCTGTGCCCGGAGTTTACTCTTATCCACAGTATCAGCAGGCGCAGCAGTTATTTCAACGGGATGCACAGACAATCACACCCGAGGCCCTCGAGAATGTCAAAGCAGCCATTGCTAACAGCGAGATCGAGCACAAGGCGGAGACCAAAAAGAAAGCGATTCCTCGCAAAGCTGCAGGGCAATCATGGGAGGATCCTTCGCTGGCAGACTGGCCAGAGAATGATCATAGGCTGTTCTGTGGTGATCTTGGTAACGAGGTAAATGACGATGTCCTTTCGAAAGCTTTTTCGCGATTTCCTTCATTTAACATGGCCAGAGTTGTGAGGGATAAACGGAGCGGAAAAACAAAAGGCTACGGATTTGTTAGCTTCGCGGATCCTTCTGACCTTGCTGTTGCTGTTAAAGAGATGAACGGTAAATATGTTGGTAATAGGCCAATCAAATTGTGCAAGAGTAAGTGGAAGGAGAGAACGGATTTTGAAGCTCTAGATAAACACAAGAAACAATCTCGGAAGAAACCGAAACCTTCAAAAGTTGGTGTATTGCATTACTGA 735 0.4925 MANPSSSARSSNAGQFTYSDGSYFPTPFHLQQSASTTSSHYAAPYVAASPAVPIPPQAPPAAVPGVYSYPQYQQAQQLFQRDAQTITPEALENVKAAIANSEIEHKAETKKKAIPRKAAGQSWEDPSLADWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVAVKEMNGKYVGNRPIKLCKSKWKERTDFEALDKHKKQSRKKPKPSKVGVLHY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0501 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 225 - -
Lele52g0501 244 CDD RRM_RBM42 130 212 IPR034215 -
Lele52g0501 244 MobiDBLite consensus disorder prediction 228 244 - -
Lele52g0501 244 Gene3D - 71 210 IPR012677 -
Lele52g0501 244 MobiDBLite consensus disorder prediction 221 244 - -
Lele52g0501 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Lele52g0501 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Lele52g0501 244 Coils Coil 91 111 - -
Lele52g0501 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Lele52g0501 244 SUPERFAMILY RNA-binding domain, RBD 120 218 IPR035979 GO:0003676
Lele52g0501 244 MobiDBLite consensus disorder prediction 108 129 - -
Lele52g0501 244 FunFam RNA-binding protein 42 71 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0501 Lele-ChrLele52 3053210 3053944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0501 138 231 Eukaryotic Initiation Factors Gene Family AT1G71770 31.915 6.04e-09 54.3