Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0493 ATGACTTCCAGAGTCGAAGGAAGTGATTTAGCTGAGGTATCTTGTGAATCTGCAACAACCATGAACTTGTTTCCTACCAAGGAGAACGACAGAACACCACAGAACTTTTCTACAATGAACTTATTCCCGCATCTCTCCACAGAAGTGATTCCAAAGGTGGCAAATTCCAGTGTATCTAAGTCTGTCACTAAGGAGCCTAGAGCTGCACAGATGACAATCTTTTATGGTGGGCAAGTTGTCGTGTTTGATGATTTTCCTGCTGAAAAAGTCATGGAGATCATGGCCTTTGCCAGCAAAGGAACATCCCCTATACAGAACAACTTTGCTTATGCCTTTCCTCAGAGCCAGCCATCGCTTCCTCATAACTCGAGTAGATTTTCTTCTGATTCCCAAAGGCCAGTTTCTCCTAATGTAAATATTATTCCTAATATTTGCAACACTTTGGTTCAAGGGCGCCCTCAGTCACCGTCTGGACCTGTGGTTGCTGAACTTCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCTTAGAGAAGAGGAAGGACAGGATTTCTGCTAGAGCACCGTATCAAACAAGCAGCCCCATGGCGGCTCCAAATAAGTCAACCGAATCGACGACATGGCTTGAACTGGCTGCAAAGCCGTCCCACATCTGA 654 0.4526 MTSRVEGSDLAEVSCESATTMNLFPTKENDRTPQNFSTMNLFPHLSTEVIPKVANSSVSKSVTKEPRAAQMTIFYGGQVVVFDDFPAEKVMEIMAFASKGTSPIQNNFAYAFPQSQPSLPHNSSRFSSDSQRPVSPNVNIIPNICNTLVQGRPQSPSGPVVAELPIARKASLHRFLEKRKDRISARAPYQTSSPMAAPNKSTESTTWLELAAKPSHI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0493 217 MobiDBLite consensus disorder prediction 186 204 - -
Lele52g0493 217 MobiDBLite consensus disorder prediction 183 204 - -
Lele52g0493 217 Pfam tify domain 66 98 IPR010399 -
Lele52g0493 217 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Lele52g0493 217 Pfam Jas motif 165 190 IPR018467 -
Lele52g0493 217 SMART tify_2 64 99 IPR010399 -
Lele52g0493 217 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 200 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0493 Lele-ChrLele52 2991882 2993154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0493 19 213 Tify Gene Family AT1G19180 39.130 1.63e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele52g0493 tify 3.3e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0457 49 2749960 2751305 Lele52g0493 52 2991882 2993154 hybridization
Lele50g0493 50 2920934 2922306 Lele52g0493 52 2991882 2993154 hybridization