Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0492 ATGGGTCGTAAACCTCACGACCCGGAGCGCACTCTTCCTAGTCGCTTGATCCTCCTTTTTGTTTGCTTGGTTTCGTGCGGTTTGGTATACGCCTTCTTCTCGGCAGTGCTCACAAACACAGGGACCTCTTCCGTTTCGGAGTTGGTTGGAGATGGCGTGGCAATGGAGAATTCTGTGGAAGGTTCTGGGGGATGCTGTAGAGGAATTGAAAATCTGGAACTATGGGGATCCGCTGTGAAGTGGGGTTCTGAGTTTAAATTTAATAATTCCGAAGATTGCTGCAACGCTTGTAAATCCATGTGTACTGGGAACGATGGACCATGTCTCTGTGATTCCTGGGTGTTTTGTGGGAATCGTGAGGCTTGCGGATCCAAGTTTGGCGAGTGCTGGTTGAAGAAGCAAAAGGATAGCTTGGCCCCTGAACGACAAGGAGCTGGGGAAAAAGTTAGTTGGACTTCCGGTCTCATCTTTGGAAAAGGAGAAGGTATCATTGATTTGGAAACAGAACACGGAGCTCTTCGCATCAAACTTTTCCCTGACTGTGCTCCACACTCAGTTGCCAACATTCTAGAGTTGCTGGCTTTGCGCCATTGTGCAGGTTGCCAATTTTATCGTGCAGAAGGCCGAGGCCAATCATGGGATTCCGAAGGAAACCACTTAAAAAATGCTCCTTTTGGCCCACCTTCTGCATTAATTCAAGGAACCTTAGAAGCACAGGGAAACCCATTTAAGAAAATTCCAGTAGAAAACTGTCCAACAATAAGAAGGGGTTCAGTTGCTTGGGTTGATTCAGGACCAGAATTCTTCATAAGCATTGCTAAACATGGGGAGTGGAAAAAAGCATACACAGTTTTCGGTTCTGTTCTTCCAGAAGACATGAGTATAGCCGAGAAAATTGCTGCACTCCCCACAGTTTCTGATGTTTGGAACAATATTAATGTTTCTGTCTTGGAAAAACCCGTTCCCTTGTTGCTACGAAGAATCCAGAAAAGCCTTCCAGATATTAACACCAATGCAAATTCAGATTAG 1029 0.4568 MGRKPHDPERTLPSRLILLFVCLVSCGLVYAFFSAVLTNTGTSSVSELVGDGVAMENSVEGSGGCCRGIENLELWGSAVKWGSEFKFNNSEDCCNACKSMCTGNDGPCLCDSWVFCGNREACGSKFGECWLKKQKDSLAPERQGAGEKVSWTSGLIFGKGEGIIDLETEHGALRIKLFPDCAPHSVANILELLALRHCAGCQFYRAEGRGQSWDSEGNHLKNAPFGPPSALIQGTLEAQGNPFKKIPVENCPTIRRGSVAWVDSGPEFFISIAKHGEWKKAYTVFGSVLPEDMSIAEKIAALPTVSDVWNNINVSVLEKPVPLLLRRIQKSLPDINTNANSD 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0492 342 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 164 306 IPR002130 GO:0000413|GO:0003755
Lele52g0492 342 PANTHER EXPRESSED PROTEIN 1 330 - -
Lele52g0492 342 Gene3D - 157 319 IPR029000 -
Lele52g0492 342 SUPERFAMILY Cyclophilin-like 159 314 IPR029000 -
Lele52g0492 342 FunFam Predicted protein 159 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0492 Lele-ChrLele52 2988877 2991106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0492 159 289 U-box Gene Family AT5G67530 27.941 5.83e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0492 52 2988877 2991106 Lele52g0492 52 2988877 2991106 ECH
Lele49g0456 49 2747074 2749118 Lele52g0492 52 2988877 2991106 hybridization
Lele50g0492 50 2917430 2919673 Lele52g0492 52 2988877 2991106 hybridization