Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0484 ATGTCTGTAGCTTCTGTGGATCCTTCACTTCTTGTTGCTGAGCTCACTCGCTTACCAGAAAGAGAAAGAGCAACATTGAATGCTATATTAGAAAGACTAGAATCGTCCCCGGAGGATGGAGTCAAAACTAAGTTTGTTATGGACTTCATCCGCCAAAGCCAGCTCATGAAGGAAGAAGTTCTGATTTTTAGTCAGTATGTTGCTCCGTTGGTCTTTCTGGTAAAACTGATCAAATCTCGCTTTAATTGGAATGTAGGAGAGCATATGATAGTAATTTATGGAAAGACCCATGAAGGGATACGTCAAGCCTCCATAGATGCATTCAATGATCCCAAAAGCAAAGCGAGGGTAATGCTAGCATCAACCAAGACTTGTTATGAAGGGATCAATCTAGTTGGTGCTTCAAGGGTTATTTTGTTGGATACCTTATGGAATCCCTCAGCAGAAAGGCAGGCTGTGTCTCGCGCTTATCGGATTGGACAGAAGAAAATCGTGTACACTTACCGGCTGATAACTGCCGGGACATGGGATCAACAGAAGCTTTATATTCAAGCTGAGAAGGATCAGTTGTCTGAGATGGTGTTTTTCGGCTCCAATGAAGCTGGCCATCGCCAGAATACCTCACCTGTTGGTTTTGACGATAAACTTTTGGAAAGGATGGGACGTAAATTTGGGACAAAAATCATGAAGAGGGGAGTTACAATTTTGTTTGAAAGTGAAGAGTAG 726 0.4256 MSVASVDPSLLVAELTRLPERERATLNAILERLESSPEDGVKTKFVMDFIRQSQLMKEEVLIFSQYVAPLVFLVKLIKSRFNWNVGEHMIVIYGKTHEGIRQASIDAFNDPKSKARVMLASTKTCYEGINLVGASRVILLDTLWNPSAERQAVSRAYRIGQKKIVYTYRLITAGTWDQQKLYIQAEKDQLSEMVFFGSNEAGHRQNTSPVGFDDKLLERMGRKFGTKIMKRGVTILFESEE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0484 241 Pfam Helicase conserved C-terminal domain 45 160 IPR001650 -
Lele52g0484 241 Gene3D - 4 239 IPR027417 -
Lele52g0484 241 SMART helicmild6 75 160 IPR001650 -
Lele52g0484 241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 51 216 IPR001650 -
Lele52g0484 241 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 228 IPR044567 GO:0080188
Lele52g0484 241 CDD SF2_C_SNF 18 171 - -
Lele52g0484 241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 198 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0484 Lele-ChrLele52 2950669 2951394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0484 29 190 RAD5 or RAD16-like Gene Family AT5G43530 31.319 2.93e-16 75.9